Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,918,181 – 6,918,285 |
Length | 104 |
Max. P | 0.966946 |
Location | 6,918,181 – 6,918,285 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 71.92 |
Mean single sequence MFE | -13.73 |
Consensus MFE | -9.66 |
Energy contribution | -10.85 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.14 |
Mean z-score | -1.74 |
Structure conservation index | 0.70 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6918181 104 + 20766785 AUCGAUGUUAUUAAAUUGGAAUCCCAUCUCAGUGCCAAUUCAAAAAUUCAACUAAUCUAUUAUACCCUUUAGCCCAACUAAUAAAGUGUAUAAAAAUCUUACAA ...((.(((.((.((((((...(........)..)))))).)).)))))..........((((((.(((((..........))))).))))))........... ( -10.90) >DroSec_CAF1 33473 88 + 1 ---------------UUGGAAUCCCACCUCAUUGAGAAUACAAAAUGUCAACUAAUCUAUUUUGCCCUUUAGCCCAACUAAUAAAGGGUAA-AUAAUCUUACAA ---------------.(((....)))......(((((..((.....))............(((((((((((..........))))))))))-)...)))))... ( -14.70) >DroSim_CAF1 33846 88 + 1 ---------------UUGGAAUCCCACCUCAGUGCGAAUACAUAAUAUCAACGAAUCUAUUAUACCCU-UAGCCCAACUAAUAAAGGGUAUUAUAAUCUUACAA ---------------..(((.((.(((....))).))....................(((.(((((((-(.............)))))))).))).)))..... ( -11.42) >DroEre_CAF1 39547 104 + 1 AUCAAUGUUUUAAAAUGCAGAUCCAGCCAAAGGGCGAAUAGGAAAUUUCAACAAAUCUAGUACACCCUUUAACUCCACAAGUAAAGGGUAUAAUAAUCUUACAA .....(((.......(((((((...(((....)))(((........))).....)))).))).((((((((.((.....))))))))))...........))). ( -17.90) >consensus _______________UUGGAAUCCCACCUCAGUGCGAAUACAAAAUUUCAACUAAUCUAUUAUACCCUUUAGCCCAACUAAUAAAGGGUAUAAUAAUCUUACAA .........................................................((((((((((((((..........))))))))))))))......... ( -9.66 = -10.85 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:33 2006