| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,915,676 – 6,915,783 |
| Length | 107 |
| Max. P | 0.570880 |
| Location | 6,915,676 – 6,915,783 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.20 |
| Mean single sequence MFE | -34.83 |
| Consensus MFE | -28.99 |
| Energy contribution | -28.80 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6915676 107 + 20766785 -------------UGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCCCGCCUUUUUAGCGCGUCCCAGAUGCGAAUUUCAA -------------.......((((((.......))))))....((((((.....))))))(((((((..((...((((((((((....))))))))))..))..)))).)))........ ( -36.00) >DroVir_CAF1 45068 107 + 1 -------------UGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCGCCUGCUUGAGAGGCGCUAAAGUAGCGAACUUCUG -------------.(((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))((((.......))))((((...))))......... ( -36.30) >DroGri_CAF1 43336 107 + 1 -------------UGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCUCUCCUUUUAUGAGCGCAAAAGUAGCGAACUUCAG -------------.(((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))..........(((.(((.......)))....))). ( -31.20) >DroWil_CAF1 51935 120 + 1 CCCGUCUGCCUUUUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCGGACAAAUUUAGCGCGCCACAGAAGUCAAUUUCAA ...(((((((((((......((((((.......))))))....((((((.....)))))).((((.......))))..))))))))))).................((((....)))).. ( -36.90) >DroMoj_CAF1 46193 107 + 1 -------------UGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCGUCUGCGGCAGAGGCGCUUAAGUAGCGAACUUGUG -------------.(((((..(((((.......)))))((.(.((((((.....)))))).).))((((.(.(((((.....))).)).).)))))))))(((.....)))......... ( -37.20) >DroAna_CAF1 35587 108 + 1 ------------UUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCCCACGAAUCGAGGCCGUCCCAGUAGCGAAUUUCAA ------------..(((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))....((((((..((.......))..)))..))).. ( -31.40) >consensus _____________UGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCGCACGAUUUAAGGGCGCCAAAGUAGCGAACUUCAA ..............(((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))..............(((.......)))........ (-28.99 = -28.80 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:32 2006