Locus 184

Sequence ID 2R_DroMel_CAF1
Location 1,442,667 – 1,442,787
Length 120
Max. P 0.562916
window420

overview

Window 0

Location 1,442,667 – 1,442,787
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.33
Mean single sequence MFE -28.62
Consensus MFE -24.26
Energy contribution -25.06
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.85
SVM decision value 0.06
SVM RNA-class probability 0.562916
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1442667 120 - 20766785
UUUUAAGGUAGAUUCAAGGCAAUUUACCAUAUUGGCCGCAAUACAAUUUCCGCCGAGCAGCGCCGACAGAACGGCGAAACAAGGACAACUGCCGCAUAAGGCCACAUAAAUACCCAACAG
......((((((((......))))))))....(((((((............))((.(((((((((......)))))............)))))).....)))))................ ( -28.50)
>DroSec_CAF1 60648 120 - 1
UUUUAAGGUAGAUUCAAGGCAAUUUACCAUAUUGGCCGCAAUACAAUUUCCGCCGAGCAGCGCCGACAGAACGGCGAAACAAGGACAACUGCCGCAUAAGGCCACAUAAAUACCCAACAG
......((((((((......))))))))....(((((((............))((.(((((((((......)))))............)))))).....)))))................ ( -28.50)
>DroSim_CAF1 59407 120 - 1
UUUUAAGGUAGAUUCAAGGCAAUUUACCAUAUUGGCCGCAAUACAAUUUCCGCCGAGCAGCGCCGACAGAACGGCGAAACAAGGACAACUGCCGCAUAAGGCCACAUAAAUACCCAACAG
......((((((((......))))))))....(((((((............))((.(((((((((......)))))............)))))).....)))))................ ( -28.50)
>DroEre_CAF1 69861 120 - 1
UUUUAAGGUAGAUUCAAGGCAAUUUACCAUAUUGGCCGCAAUACAAUUUCCGCCGAGCAGCACCGCCAGAACGGCGGAACAACGACAACUGCCGCAUAAGGCCACAUAAAUACCCAACAG
......((((((((......))))))))....(((((..........((((((((.((......)).....))))))))...((........)).....)))))................ ( -29.90)
>DroYak_CAF1 65551 120 - 1
UUUUAAGGUAGAUUCAAGGCAAUUUACCAUAUUGGCCACAAUACAAUUUCCGCCGAGCAGCGCCAACAGAACGGCAGAACAACGACAACUGCCGCAUAAGGCCACAUAAAUACCCAACAG
......((((((((......))))))))....(((((.............(((......))).........((((((...........)))))).....)))))................ ( -27.70)
>consensus
UUUUAAGGUAGAUUCAAGGCAAUUUACCAUAUUGGCCGCAAUACAAUUUCCGCCGAGCAGCGCCGACAGAACGGCGAAACAAGGACAACUGCCGCAUAAGGCCACAUAAAUACCCAACAG
......((((((((......))))))))....(((((((............))((.(((((((((......)))))............)))))).....)))))................ (-24.26 = -25.06 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:36 2006