Locus 1838

Sequence ID 2R_DroMel_CAF1
Location 6,893,432 – 6,893,542
Length 110
Max. P 0.721376
window3054

overview

Window 4

Location 6,893,432 – 6,893,542
Length 110
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 77.07
Mean single sequence MFE -35.97
Consensus MFE -22.35
Energy contribution -22.22
Covariance contribution -0.13
Combinations/Pair 1.37
Mean z-score -1.50
Structure conservation index 0.62
SVM decision value 0.40
SVM RNA-class probability 0.721376
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6893432 110 - 20766785
AUCAUCCUGAUCGGUGUGGGCAUCGGCAUUGCUUUUAUCCAGAUUUUGGGCAUCGUUCUGGCCUGCUAUCUGGCCAACUCCAUUCGACAGGAGCG---GGCCAAGUAAUACC-C
............((((..(((...(((..(((((..((....))...)))))..)))...)))..)((..(((((..((((........))))..---)))))..))..)))-. ( -35.30)
>DroPse_CAF1 6891 110 - 1
AGCAUCCUGAUCGGAGUGGGCAUCGGCAUUGCCUUCAUCCAGAUACUGGGCAUUGUCCUCGCCUGCUAUCUGGCCUCCUCCAUCCGGCGGGAACA---GGUCAAGUAAUCCA-C
.....((((...((((..(((...(((...)))......((((((..((((.........))))..)))))))))..)))).(((....))).))---))............-. ( -37.80)
>DroGri_CAF1 10735 114 - 1
GUUAUUCUGAUUGGUGUUGGCAUCGGCAUCGCAUUCAUCCAGAUCCUGGGCAUCAUACUCGCCUGCUACCUGGCCUCGGCCAUCAGGCACGCCCGCCAGGCCAACUAAUCGAAC
....(((.(((((((..((((...(((...((.....(((((...)))))..........(((((.....((((....)))).)))))..))..)))..)))))))))))))). ( -38.80)
>DroWil_CAF1 14507 110 - 1
GUCAUCUUGAUUGGUGUGGGCAUUGGCAUUGCCUUUAUUCAGCUUCUAGGCAUUGCUUUGGCCUGCUAUCUUGCCUCAUCCAUACGACGGGAUCG---AUCCCAGUAAAUUC-C
(((.....(((.((((..(((...((((.(((((.............))))).))))...)))..)......)))..))).....)))((((...---.)))).........-. ( -32.92)
>DroAna_CAF1 6768 109 - 1
AUUAUCCUGAUCGGUGUUGGUAUUGGGAUUGCCUUCAUCCAAAUCCUGGGCAUCAUUCUAGCCUGCUAUUUGGCCAACUCCAUUCGGCAGGAAAG---GGCCAAGUAAG-CU-C
............((..((((....(((....)))....))))..)).((((.........))))(((((((((((...(((........)))...---)))))))).))-).-. ( -32.40)
>DroPer_CAF1 7461 110 - 1
AGCAUCCUGAUCGGAGUGGGCAUCGGCAUUGCCUUCAUCCAGAUACUGGGCAUUGUCCUCGCCUGCUAUCUGGCCUCCUCCAUCCGGCGGGAACA---GGCCAAGUAAUCCA-C
............((((..(((...((((.(((((.............))))).))))...)))..)((..((((((..(((........)))..)---)))))..)).))).-. ( -38.62)
>consensus
AUCAUCCUGAUCGGUGUGGGCAUCGGCAUUGCCUUCAUCCAGAUACUGGGCAUCGUUCUCGCCUGCUAUCUGGCCUCCUCCAUCCGGCAGGAACG___GGCCAAGUAAUCCA_C
....(((((.((((.(((((((.......)))......((((((..(((((.........)))))..))))))......)))))))))))))...................... (-22.35 = -22.22 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:27 2006