Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,880,888 – 6,881,008 |
Length | 120 |
Max. P | 0.560731 |
Location | 6,880,888 – 6,881,008 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.16 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -21.56 |
Energy contribution | -22.56 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 0.86 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6880888 120 - 20766785 CACACGCAGCAGCGACGUCUCCGCCUCUGUGCCCCUCGGUCCCUCUCUCACUCACUCUUUUGGCACAGCACAAGUCCUGGCGGCCGGCUCUUGCUCUACCUCCCCCCACCACCAACUUCC .....(.(((((.((.(((.(((((.(((((((....(((.............))).....)))))))..........)))))..)))))))))))........................ ( -25.82) >DroSim_CAF1 554 113 - 1 CACUCGCAGCAGCGACGUCUCCGCCUCUGUGCCCCUCGCUCCCUCUCUCACUCACUCUUUUGGCACAGCACAAGUCCUGGCGGCCGGCUCUUGCUCUACCCCCU-------CCAACCUCC .....(.(((((.((.(((.(((((.(((((((............................)))))))..........)))))..)))))))))))........-------......... ( -24.99) >DroEre_CAF1 1636 102 - 1 CACUCGCAGCAGCGACGUCUCCGCCUCUGUGCCCCUCUGUCCCUCUCUCACUCACUCUUUUGGCA-----CAAGUCCUGGCGGCCGGCUCUUGCUCUACCUCCCC-------------CC .....(.(((((.((.(((.(((((.(((((((............................))))-----).))....)))))..))))))))))).........-------------.. ( -24.19) >consensus CACUCGCAGCAGCGACGUCUCCGCCUCUGUGCCCCUCGGUCCCUCUCUCACUCACUCUUUUGGCACAGCACAAGUCCUGGCGGCCGGCUCUUGCUCUACCUCCCC______CCAAC_UCC .....(.(((((.((.(((.(((((.(((((((............................)))))))..........)))))..)))))))))))........................ (-21.56 = -22.56 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:15 2006