Locus 1831

Sequence ID 2R_DroMel_CAF1
Location 6,866,765 – 6,866,858
Length 93
Max. P 0.856354
window3039

overview

Window 9

Location 6,866,765 – 6,866,858
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.82
Mean single sequence MFE -41.22
Consensus MFE -28.96
Energy contribution -29.24
Covariance contribution 0.28
Combinations/Pair 1.15
Mean z-score -1.59
Structure conservation index 0.70
SVM decision value 0.81
SVM RNA-class probability 0.856354
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6866765 93 - 20766785
---------------------------AAGCUGCUGAUGGUGGUAGCAGAGCCGCCGACAAUGCGGCCAUCCAACUGAGGCAGGAGUCCCUCAGGGACGGUGCCUCCCAGGGCGCAGGCU
---------------------------..((((((......))))))..((((((((......))))...((....((((((...(((((...)))))..))))))....))....)))) ( -39.90)
>DroVir_CAF1 14717 120 - 1
UUACGCUGCAGGGAGAUCUGCCAGGGGAAGCUGCCGAUGGUGGUGGCAGUGCCGCCAACAAUGCGACCAUCCAACUGGGGCAGGAGACCCUCAGGGAUCGCAGCACCGAAGGCGCAGGCA
....((((((((....)))))........((.(((..((((((((((...)))))).....(((((...(((..((((((..(....)))))))))))))))..))))..))))).))). ( -48.60)
>DroGri_CAF1 13997 93 - 1
---------------------------AAGCUGCUGAUGCUAGUGGCAGUGCCGCCAACAAUGCGACCAUCCAACUGGGGGAGGAGACCCUCAGGGAGCGCAGCUCCAAAGGCGCAGGCA
---------------------------..((..(((....)))..))......(((.....((((.((......(((((((......)))))))(((((...)))))...))))))))). ( -39.10)
>DroMoj_CAF1 20290 93 - 1
---------------------------AAGCUGCCGAUGGUGGUGGGAGUGCCGCCAACAAUGCGACCAUCCAACUGGGGCAGGAGACCCUCAGGGAUAGCAGCACCAAAGGCGCAGGCA
---------------------------..((.(((..(((((((((.....)))))......((..(.((((..((((((..(....))))))))))).)..))))))..)))))..... ( -37.60)
>DroAna_CAF1 12034 93 - 1
---------------------------AAGCUGGAGAUGGUGGUAGCGCUACCUCCGACAAUGCGGCCAUCAAGCUGGGGCAGGAGACCCUCGGGGAUGGUGCCUCCCAGGGCGCAGGCA
---------------------------..(((((((.(((((....))))).)))).....(((.((((((...((((((..(....))))))).))))))((((....)))))))))). ( -40.90)
>consensus
___________________________AAGCUGCCGAUGGUGGUGGCAGUGCCGCCAACAAUGCGACCAUCCAACUGGGGCAGGAGACCCUCAGGGAUCGCAGCUCCAAAGGCGCAGGCA
.............................(((...(.(((((((......))))))).)..((((.((......((((((..(....)))))))(((.......)))...))))))))). (-28.96 = -29.24 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:13 2006