Locus 1829

Sequence ID 2R_DroMel_CAF1
Location 6,854,488 – 6,854,582
Length 94
Max. P 0.868391
window3036

overview

Window 6

Location 6,854,488 – 6,854,582
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 80.34
Mean single sequence MFE -33.17
Consensus MFE -20.35
Energy contribution -19.22
Covariance contribution -1.14
Combinations/Pair 1.45
Mean z-score -2.28
Structure conservation index 0.61
SVM decision value 0.86
SVM RNA-class probability 0.868391
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6854488 94 - 20766785
C------CGCU---ACUGUUGUUGGCCAUUGGGUUCUCCUCCGUUAUUUCAAUUUCCGGUCAACCGGAGGGCAGAAUAAUUAAUGGCACUACGGUAGAUAUUG
.------..((---(((((.((..(((((((((.......))(((((((...(((((((....)))))))...)))))))))))))))).)))))))...... ( -32.00)
>DroSec_CAF1 1718 94 - 1
U------CGCU---ACUGUUGUUAGCCAUUGGGUUCACCUCCGUUAUAUCCAUUUCCGGCCAACCGGCGGGCAGGAUAAUUAAUGGCACUACGGUAGAUAUUG
.------..((---(((((.((..(((((((((....)).......(((((....((.(((....))).))..)))))..))))))))).)))))))...... ( -31.90)
>DroSim_CAF1 3403 94 - 1
C------CGCU---ACUGUUGUUGGCCAUUGGGUUCGCCUCCGUUAUAUCCAUUUCCGGCCAACCGGAGGGCAGGAUAAUUAAUGGCACUACGGUAGAUAUUG
.------..((---(((((.((..(((((((((....)).......(((((.(((((((....)))))))...)))))..))))))))).)))))))...... ( -33.60)
>DroEre_CAF1 1710 94 - 1
C------CGCU---ACUGCUGUUGGCCAUUGGCUGCUCCUGCAUUCCAACCAUUGCCGGUCAACCGGAGGGCAGGAUUAUUGAUGGCACUACGGUGGACAUAG
.------....---.(..((((..(((((..(.((.((((((.((((.(((......))).....)))).)))))).)))..)))))...))))..)...... ( -35.60)
>DroYak_CAF1 3526 94 - 1
C------CACU---ACUGUUGUUGGCUAUUGGGUUCUCCUCCGUUAUUUGCAUUUCCGGUCAACCGGAGGGCAGGAUAAUUAAUGGCACUACGGUAGAUAUAG
.------..((---(((((.((..((((((((....((((((((.....))..((((((....)))))))).))))...)))))))))).)))))))...... ( -33.00)
>DroAna_CAF1 1790 103 - 1
CCUGUUGCGCUUCUGCUGCUUCUGGCCAUUGGAUCCUGUUUUAUUCUCUCCCAGGCUGUUCAACCGGAGGGCAGGAUUAUCAAUGGCACAUCGGUGGAUAUUG
...........((..(((....((((((((((((((((.......((((((..((........)))))))))))))))..))))))).)).)))..))..... ( -32.91)
>consensus
C______CGCU___ACUGUUGUUGGCCAUUGGGUUCUCCUCCGUUAUAUCCAUUUCCGGUCAACCGGAGGGCAGGAUAAUUAAUGGCACUACGGUAGAUAUUG
...............(((((((..(((((((((.......)).............((((....)))).............)))))))...)))))))...... (-20.35 = -19.22 +  -1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:10 2006