Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,851,804 – 6,851,910 |
Length | 106 |
Max. P | 0.945838 |
Location | 6,851,804 – 6,851,910 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.11 |
Mean single sequence MFE | -22.91 |
Consensus MFE | -14.96 |
Energy contribution | -15.28 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.12 |
Mean z-score | -2.20 |
Structure conservation index | 0.65 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.945838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6851804 106 - 20766785 AUUUAU-----GCACUUAAGCAU---------AGCCUAAUCUAACUCUUCCUAAUCAUCUUGUAGAGCACAGAGUGCGUUUCUAUGCUCUCUGCCCCCGACUCCCACAUGUCCUCCGCGU ..((((-----((......))))---------))...........................(..(((..(((((.((((....)))).))))).....(((........))))))..).. ( -22.40) >DroPse_CAF1 4452 119 - 1 AACCCUACUUUCCACUA-ACCUAACCUCACUUAUCCUAACCUAGCUCUUUCUGAUCAUUUUGUAGAGAACAGAGUGGGUCUCUAUGCUCUCCGCCCCGGACUCCCACAUGUCCUCUGCAU .................-..........................................(((((((.(((..(((((..(((..((.....))...)))..))))).))).))))))). ( -24.70) >DroSim_CAF1 757 105 - 1 AUUUAU-----GCAUUC-GGCUA---------UGCUUAUUCUAACUCUUCCUAAUCAUCUUGUAGAGCACGGAGUGCGUUUCUAUGCUCUCUGCCCCGGACUCCCACAUGUCCUCCGCGU ....((-----((....-(((..---------(((((...........................))))).((((.((((....)))).)))))))..((((........))))...)))) ( -24.43) >DroYak_CAF1 849 105 - 1 AUUUAU-----GCAUUA-GACUA---------UGCUUACUCUAACUCUUCCUAAUCAUCUUGUAGAGCACGGAGUGCGUUUCUAUGCUCUCUGCCCCCGACUCCCACAUGUCCUCCGCGU ......-----((((..-....)---------)))..........................(..(((..(((((.((((....)))).))))).....(((........))))))..).. ( -20.10) >consensus AUUUAU_____GCACUA_AGCUA_________AGCCUAAUCUAACUCUUCCUAAUCAUCUUGUAGAGCACAGAGUGCGUUUCUAUGCUCUCUGCCCCCGACUCCCACAUGUCCUCCGCGU ...............................................................((((((.((((.....)))).))))))..((...((((........))))...)).. (-14.96 = -15.28 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:09 2006