Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,843,036 – 6,843,142 |
Length | 106 |
Max. P | 0.892944 |
Location | 6,843,036 – 6,843,142 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -18.96 |
Energy contribution | -19.32 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.50 |
Structure conservation index | 0.88 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6843036 106 + 20766785 UUAAAUGACUUGGAUGAUUUUCACAAAUUGAAAGUUAUUUUUAUCCGGCAUUAGAAAGCAAGCCAUUGAAAGUUUAACUGUUUCAAUGGGCUAAUAAUGAACCCUU ......((...((((((((((((.....))))))))))))...)).(((((((...(((...(((((((((.........))))))))))))..)))))..))... ( -22.80) >DroSec_CAF1 15956 106 + 1 UUAAAUGACUUGGGUGAUUUUCACAAAUUGAAAGUUAUUUUUAUCCGGCAUUAGAAAGCAAGCCAUUGAAAGUUUAACUGUUUCAAUGGGCUAAUAAUGAACCCUU ...........((((((((((((.....))))))))............(((((...(((...(((((((((.........))))))))))))..))))).)))).. ( -24.40) >DroSim_CAF1 14416 106 + 1 UUAAAUGACUUGGGUGAUUUUCACAAAUUGAAAGUUAUUUUUAUCCGGCAUUAGAAAGCAAGCCAUUGAAAGUUUAACUGUUUCAAUGGGCUAAUAAUGAACCCUU ...........((((((((((((.....))))))))............(((((...(((...(((((((((.........))))))))))))..))))).)))).. ( -24.40) >DroEre_CAF1 17624 106 + 1 UUAAAUGACUUGUUUCAUUUUCACAAAUUGAAAGUUAUUUUCAUGCCGCAUUAGAAAGCAAACCAUUGAAAGUUUAACUGUUUCAAUCGGCUAAUAAUGAACCCUU ..(((((((((...(((...........))))))))))))(((((((((........)).....(((((((.........))))))).))).....))))...... ( -14.00) >DroYak_CAF1 16827 106 + 1 UCAAAUGACUUGGAUAAUUUUCACAAAUUGAAAGUUAUUUUUAUCCCGCAUUAGAAAGCCAGCCAUUGAAAGUUUAACUGUUUCAAUGGGCUAAUAAUGAACACUU ......((...((((((((((((.....))))))))))))...))...(((((...((((...((((((((.........))))))))))))..)))))....... ( -22.40) >consensus UUAAAUGACUUGGAUGAUUUUCACAAAUUGAAAGUUAUUUUUAUCCGGCAUUAGAAAGCAAGCCAUUGAAAGUUUAACUGUUUCAAUGGGCUAAUAAUGAACCCUU ....((((...((((((((((((.....))))))))))))))))....(((((...(((...(((((((((.........))))))))))))..)))))....... (-18.96 = -19.32 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:08 2006