Locus 1826

Sequence ID 2R_DroMel_CAF1
Location 6,836,856 – 6,836,961
Length 105
Max. P 0.867193
window3033

overview

Window 3

Location 6,836,856 – 6,836,961
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 90.16
Mean single sequence MFE -37.53
Consensus MFE -31.17
Energy contribution -30.98
Covariance contribution -0.19
Combinations/Pair 1.25
Mean z-score -2.38
Structure conservation index 0.83
SVM decision value 0.85
SVM RNA-class probability 0.867193
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6836856 105 - 20766785
AACUUGUUCAUCAUGUGCAAUGUGAUGACCAUUUUCUGGACCAUGUUCGUGGCCCUGCCCGAGUCGAAGAACGUGAUCGAAAUGGGCGACGACUUGGUUUGGAUU
....((.(((((((((...))))))))).))...((..(((((.((.(((.((((....(((..((.....))...)))....)))).))))).)))))..)).. ( -38.00)
>DroSec_CAF1 9786 105 - 1
AACUUGUUCAUCAUGUGCAAUGUGAUAACCACUUUCUGGACCAUGUUCGUGGCCCUGCCCGAGUCGAAGAACGUGAUCGAAAUGGGCGACGACUUGGUUUGGAUU
.....(((.(((((((...)))))))))).....((..(((((.((.(((.((((....(((..((.....))...)))....)))).))))).)))))..)).. ( -33.60)
>DroSim_CAF1 8322 105 - 1
AACUUGUUCAUCAUGUGCAAUGUGAUGACCACUUUCUGGACCAUGUUCGUGGCCCUGCCCGAGUCGAAGAACGUGAUCGAAAUGGGCGACGACUUGGUUUGGAUU
....((.(((((((((...))))))))).))...((..(((((.((.(((.((((....(((..((.....))...)))....)))).))))).)))))..)).. ( -37.90)
>DroEre_CAF1 11638 105 - 1
AACUGGUUCAUCAUGUGCAAUGUGAUGGCCACUUUCUGGGCCAUGUUCGUGGCCCUGCCCGAGUCGAAGAACGUGAUCGAAAUGGGCGACGACUUGGUUUGGAUU
...((((.((((((((...))))))))))))...((((((((((....)))))))...((((((((..(..(((.......)))..)..))))))))...))).. ( -40.30)
>DroYak_CAF1 10731 105 - 1
AACUUUUUCAUCAUGGGCAAUGUGAUGACCAUUUUCUGGACCAUGUUCGUGGCCCUGCCCGAGUCGAAGAACGUGAUCGAAAUGGGCGACGACUUGGUUUGGAUU
.......((((((((.....))))))))......((..(((((.((.(((.((((....(((..((.....))...)))....)))).))))).)))))..)).. ( -37.00)
>DroAna_CAF1 9509 105 - 1
AACUGGUUCAUCUUGUCCAAUAUGAUGGUGAUGUGGUGGACUAUGGUUUUUGCCCUGCCAGAGUCCAAAAAUGUCAUCGACAUGGGCGACGACAUGGUCUGGCUU
..(..(..(((.(((((...((((.(((((((((..((((((.((((.........)))).))))))...))))))))).))))...))))).)))..)..)... ( -38.40)
>consensus
AACUUGUUCAUCAUGUGCAAUGUGAUGACCACUUUCUGGACCAUGUUCGUGGCCCUGCCCGAGUCGAAGAACGUGAUCGAAAUGGGCGACGACUUGGUUUGGAUU
.......(((((((.......)))))))......((..(((((.(.((((.((((....(((..((.....))...)))....)))).))))).)))))..)).. (-31.17 = -30.98 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:07 2006