Locus 1823

Sequence ID 2R_DroMel_CAF1
Location 6,825,553 – 6,825,645
Length 92
Max. P 0.920967
window3028

overview

Window 8

Location 6,825,553 – 6,825,645
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 91.46
Mean single sequence MFE -20.62
Consensus MFE -18.08
Energy contribution -18.28
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -1.56
Structure conservation index 0.88
SVM decision value 1.14
SVM RNA-class probability 0.920967
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6825553 92 - 20766785
AAACAUAAAUUAAUGCAGAUAUGGAAUCCCAAUUGCUGGUCUUGACUAGCACAUUUGAAAAGUGUUCGGUAGAACGUAGAGCUUUGCAAAUG
.....................(((....)))..(((((((....)))))))((((((.(((((...((......))....))))).)))))) ( -21.30)
>DroSec_CAF1 5982 89 - 1
A---AUAAAUUAAUGCAGAUAUGGAAUCCCAAUUGCUGGUCUUGACUAGCACAUUUGAAAAGUGUUCGGUAGAACGUAGAGCUUUGCAAAUG
.---.................(((....)))..(((((((....)))))))((((((.(((((...((......))....))))).)))))) ( -21.30)
>DroSim_CAF1 6383 89 - 1
A---AUAAAUUAAUGCAGAUAUGGAAUCCCAAUUGCUGGUCUUGACUAGCACAUUUAAAAAGUGUUCUGGAGAACGUAUAGCUUUGCAAAUG
.---.........((((((((((...(((.....((((((....))))))(((((.....)))))...)))...))))....)))))).... ( -20.00)
>DroEre_CAF1 6046 89 - 1
U---AUAAAUUAAUGCAGAUAUGGAAUCCUAAUUGCUGAUCUUGACUAGCACAUUUGAAAAGUGUUCGAGGGGUCGCACAGCUUUGCAAAUG
.---.........((((((..(((....)))..(((.((((((..(.(((((.........))))).).)))))))))....)))))).... ( -17.10)
>DroYak_CAF1 7107 89 - 1
C---AUAAAUUAAUGCAGAUAUGGAAUUCUAAUUGCUGGUCUUGACUAGCACAUUUGAAAAGUGUUCGAGAGAACGUACAGCUUUGCAAAUG
.---.........((((((..((...(((.((((((((((....))))))).))).)))....((((....))))...))..)))))).... ( -23.40)
>consensus
A___AUAAAUUAAUGCAGAUAUGGAAUCCCAAUUGCUGGUCUUGACUAGCACAUUUGAAAAGUGUUCGGGAGAACGUACAGCUUUGCAAAUG
.....................(((....)))..(((((((....)))))))((((((.(((((((((....)))).....))))).)))))) (-18.08 = -18.28 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:02 2006