Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,438,237 – 1,438,676 |
Length | 439 |
Max. P | 0.984905 |
Location | 1,438,237 – 1,438,357 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.75 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -29.44 |
Energy contribution | -29.88 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.53 |
Structure conservation index | 0.90 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669613 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1438237 120 - 20766785 CGUUUGCUGCACAUCAAUCUCGUAUCGGACCAAUCCAUCAAAUUCGGGACGCGGGAUUAAGGCACAGCAAGCAGGGUUCAUUACAGAUAAAAUUAUCAUUAUGCGUACGGUAUAAAUUCA .((((((((..(...(((((((..(((((....))).((......))))..)))))))...)..)))))))).((((........((((....)))).((((((.....)))))))))). ( -30.10) >DroSec_CAF1 55610 120 - 1 CGCUUGCUGCACAUCAAUCUCGUAUCGGACCAAUCCAUAAAAUUGGGGACGCGGGAUUAAGGCACAGCAAGCAGGGUUCAUUACAGAUAAGAUUAUCAUUAUGCGUACGGUAUAAAUUCA .((((((((..(...(((((((..((...(((((.......))))).))..)))))))...)..)))))))).((((........((((....)))).((((((.....)))))))))). ( -35.10) >DroEre_CAF1 54780 120 - 1 CGUUUGCUGCACAUCAAUCUCGUAUCGGACCAAUCCAUAGGAUUCGGGACGCGGGAUUAAGGCACAGCAAGCAGGGUUCAUUAGAGAUACAAUUAUCAUUAUGAGUACGGUAUAAAUUCA .((((((((..(...(((((((...((..(((((((...))))).))..)))))))))...)..)))))))).(..(((((....((((....))))...)))))..)............ ( -34.20) >DroYak_CAF1 59798 120 - 1 CGUUUGCUGCACAUCAAUCUCGUAUCGGACCAAUCCGUGGGAUUCGGGACGCGGGAUUAAGGCUCAGCAAGCAGGGUUCGUUAGAGAUAAAAUUAUUAUUAUGAGUACGGUAUAAAUUCA .((((((((..(...(((((((...((..(((((((...))))).))..)))))))))...)..)))))))).(..(((((....((((....))))...)))))..)............ ( -32.10) >consensus CGUUUGCUGCACAUCAAUCUCGUAUCGGACCAAUCCAUAAAAUUCGGGACGCGGGAUUAAGGCACAGCAAGCAGGGUUCAUUACAGAUAAAAUUAUCAUUAUGAGUACGGUAUAAAUUCA .((((((((..(...(((((((...((..((((((.....)))).))..)))))))))...)..)))))))).(..(((((....((((....))))...)))))..)............ (-29.44 = -29.88 + 0.44)
Location | 1,438,277 – 1,438,397 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -31.48 |
Consensus MFE | -25.60 |
Energy contribution | -26.60 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.94 |
Structure conservation index | 0.81 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1438277 120 + 20766785 UGAACCCUGCUUGCUGUGCCUUAAUCCCGCGUCCCGAAUUUGAUGGAUUGGUCCGAUACGAGAUUGAUGUGCAGCAAACGAUUGCAUUUGCCAAAAUGAAAGCAAAUAUUUUAAAUACUU .......(((((((((..(.((((((.((((..((((.((....)).))))..))...)).)))))).)..)))).........(((((....))))).)))))................ ( -29.00) >DroSec_CAF1 55650 120 + 1 UGAACCCUGCUUGCUGUGCCUUAAUCCCGCGUCCCCAAUUUUAUGGAUUGGUCCGAUACGAGAUUGAUGUGCAGCAAGCGAUUGCAUUUGCCAAAAUGAAAUCAAAUAUUUUAAAUACUU ........((((((((..(.((((((.((..((.((((((.....))))))...))..)).)))))).)..))))))))((((.(((((....))))).))))................. ( -40.40) >DroEre_CAF1 54820 119 + 1 UGAACCCUGCUUGCUGUGCCUUAAUCCCGCGUCCCGAAUCCUAUGGAUUGGUCCGAUACGAGAUUGAUGUGCAGCAAACG-UUGCAUUUGCCAAAACAAAAUCAAAUAUCUUAAAUACUU (((.....(.((((((..(.((((((.((((..((.(((((...)))))))..))...)).)))))).)..)))))).)(-((((....))...)))....)))................ ( -29.40) >DroYak_CAF1 59838 120 + 1 CGAACCCUGCUUGCUGAGCCUUAAUCCCGCGUCCCGAAUCCCACGGAUUGGUCCGAUACGAGAUUGAUGUGCAGCAAACGAUUGCAUUUGCCAAAACGAAUUCAAAUAUCUUAAAUACUU .......((.((((((.((.((((((.((((..((.(((((...)))))))..))...)).)))))).)).)))))).)).(((.(((((......))))).)))............... ( -27.10) >consensus UGAACCCUGCUUGCUGUGCCUUAAUCCCGCGUCCCGAAUCCUAUGGAUUGGUCCGAUACGAGAUUGAUGUGCAGCAAACGAUUGCAUUUGCCAAAACGAAAUCAAAUAUCUUAAAUACUU ........(.((((((..(.((((((.((((..((.(((((...)))))))..))...)).)))))).)..)))))).)((((.(((((....))))).))))................. (-25.60 = -26.60 + 1.00)
Location | 1,438,277 – 1,438,397 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -28.79 |
Energy contribution | -28.60 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -1.78 |
Structure conservation index | 0.84 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751774 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1438277 120 - 20766785 AAGUAUUUAAAAUAUUUGCUUUCAUUUUGGCAAAUGCAAUCGUUUGCUGCACAUCAAUCUCGUAUCGGACCAAUCCAUCAAAUUCGGGACGCGGGAUUAAGGCACAGCAAGCAGGGUUCA ............((((((((........)))))))).....((((((((..(...(((((((..(((((....))).((......))))..)))))))...)..))))))))........ ( -31.70) >DroSec_CAF1 55650 120 - 1 AAGUAUUUAAAAUAUUUGAUUUCAUUUUGGCAAAUGCAAUCGCUUGCUGCACAUCAAUCUCGUAUCGGACCAAUCCAUAAAAUUGGGGACGCGGGAUUAAGGCACAGCAAGCAGGGUUCA ((((((.....))))))((((.(((((....))))).))))((((((((..(...(((((((..((...(((((.......))))).))..)))))))...)..))))))))........ ( -34.40) >DroEre_CAF1 54820 119 - 1 AAGUAUUUAAGAUAUUUGAUUUUGUUUUGGCAAAUGCAA-CGUUUGCUGCACAUCAAUCUCGUAUCGGACCAAUCCAUAGGAUUCGGGACGCGGGAUUAAGGCACAGCAAGCAGGGUUCA ..((((((((((((........)))))))...)))))..-.((((((((..(...(((((((...((..(((((((...))))).))..)))))))))...)..))))))))........ ( -33.80) >DroYak_CAF1 59838 120 - 1 AAGUAUUUAAGAUAUUUGAAUUCGUUUUGGCAAAUGCAAUCGUUUGCUGCACAUCAAUCUCGUAUCGGACCAAUCCGUGGGAUUCGGGACGCGGGAUUAAGGCUCAGCAAGCAGGGUUCG (((((((...)))))))((((((......((....))....((((((((..(...(((((((...((..(((((((...))))).))..)))))))))...)..)))))))).)))))). ( -36.50) >consensus AAGUAUUUAAAAUAUUUGAUUUCAUUUUGGCAAAUGCAAUCGUUUGCUGCACAUCAAUCUCGUAUCGGACCAAUCCAUAAAAUUCGGGACGCGGGAUUAAGGCACAGCAAGCAGGGUUCA ..(((((((((((..........))))))...)))))....((((((((..(...(((((((...((..((((((.....)))).))..)))))))))...)..))))))))........ (-28.79 = -28.60 + -0.19)
Location | 1,438,357 – 1,438,477 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.14 |
Mean single sequence MFE | -27.02 |
Consensus MFE | -19.30 |
Energy contribution | -19.42 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.10 |
Mean z-score | -2.03 |
Structure conservation index | 0.71 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1438357 120 - 20766785 ACCACGCCGCAUCUGCGUUGUGUGCCGCACAUUAAAUGCAAUCCAGAAAAAUUGAAGAUAUAUUUACGCAAACUGCACUUAAGUAUUUAAAAUAUUUGCUUUCAUUUUGGCAAAUGCAAU ..((((((((....)))..)))))..((...((((((((.............((((......)))).((.....))......))))))))...(((((((........)))))))))... ( -23.90) >DroSec_CAF1 55730 120 - 1 ACCACGCCGCAUCUGCGUUGUAUGCCGCACAUUAAAUGCAAGCCAGAAAAAUUGAAGAUAUAUUUACGCAAACUGCAUUUAAGUAUUUAAAAUAUUUGAUUUCAUUUUGGCAAAUGCAAU .....((.(((((......).)))).))........((((.(((((((....(((((..........((.....))..((((((((.....))))))))))))))))))))...)))).. ( -24.80) >DroEre_CAF1 54900 119 - 1 ACAAUGCCGCAUCCGCGUUGUGUGCGGCAAAUUAAAUGCAAGCCGGAAAAAUUGAAGAUAAAUUUACGCAAAGUGCAUUUAAGUAUUUAAGAUAUUUGAUUUUGUUUUGGCAAAUGCAA- ....(((((((..(.....)..))))))).......((((.(((((((...................((.....))..(((((((((...))))))))).....)))))))...)))).- ( -29.40) >DroYak_CAF1 59918 120 - 1 ACCAUGCCGCAUCUACGAUGUGUGCCGCAAAUUAAAUGCAAGCCAGAAAAAUUUAAGAUGAAUUUACGCAAACUGAAUUUAAGUAUUUAAGAUAUUUGAAUUCGUUUUGGCAAAUGCAAU .....((((((((...)))))).))...........((((.(((((((((((((.....)))))).........(((((((((((((...))))))))))))).)))))))...)))).. ( -30.00) >consensus ACCACGCCGCAUCUGCGUUGUGUGCCGCAAAUUAAAUGCAAGCCAGAAAAAUUGAAGAUAAAUUUACGCAAACUGCAUUUAAGUAUUUAAAAUAUUUGAUUUCAUUUUGGCAAAUGCAAU .....((.(((((......).)))).))........((((.(((((((...................((.....))..(((((((((...))))))))).....)))))))...)))).. (-19.30 = -19.42 + 0.13)
Location | 1,438,437 – 1,438,556 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.36 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -22.82 |
Energy contribution | -23.63 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.77 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1438437 119 - 20766785 ACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUUUUUUCAGUGAACAAAAAGGGAAAUAA-AAGUGCUGUUCAUAUACCACGCCGCAUCUGCGUUGUGUGCCGCACAUUAAAUGCA ..(((((((((((........(((((.....))))).........)))))..............-..((((.((....((((.((((.......)))).)))))).))))...)))))). ( -29.43) >DroSec_CAF1 55810 119 - 1 ACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUUGUUUCAGUGAACAAUAAGGGAAAUAA-GAGUGCAGUUCAUAUACCACGCCGCAUCUGCGUUGUAUGCCGCACAUUAAAUGCA ..(((((((((((........(((((.....))))).........)))))..............-..((((.((....((((.((((.......)))).)))))).))))...)))))). ( -29.43) >DroEre_CAF1 54979 117 - 1 ACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUU-UUUCAGUGAACAAAAAGGGCAAUAAAAAGUGCAG--CAUAUACAAUGCCGCAUCCGCGUUGUGUGCGGCAAAUUAAAUGCA .(.(.((((((((........(((((.....)))))..-......)))))))).).)(((........))).(--(((.((...(((((((..(.....)..)))))))...)).)))). ( -34.89) >DroYak_CAF1 59998 119 - 1 AUGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUU-UUUCAGUGAACAAAAAGAGAAAUAAAAAGAGCAGUUCAUAUACCAUGCCGCAUCUACGAUGUGUGCCGCAAAUUAAAUGCA .((((((((((((........(((((.....)))))..-......)))))...................((.((......))...((((((((...)))))).)).)).....))))))) ( -25.19) >consensus ACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUU_UUUCAGUGAACAAAAAGGGAAAUAA_AAGUGCAGUUCAUAUACCACGCCGCAUCUGCGUUGUGUGCCGCAAAUUAAAUGCA ..(((((((((((........(((((.....))))).........))))).................((((....((((((..((((.......))))))))))..))))...)))))). (-22.82 = -23.63 + 0.81)
Location | 1,438,477 – 1,438,596 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.99 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -23.99 |
Energy contribution | -24.05 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.82 |
Structure conservation index | 0.90 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1438477 119 + 20766785 AUAUGAACAGCACUU-UUAUUUCCCUUUUUGUUCACUGAAAAAAUUGCCGGAUUGGCAAACAAAUGUUGAACAAAUACGUAGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAU .........(((...-.....(((((.((((((((.........(((((.....)))))........)))))))).....))).))(((((((....))))))).........))).... ( -26.33) >DroSec_CAF1 55850 119 + 1 AUAUGAACUGCACUC-UUAUUUCCCUUAUUGUUCACUGAAACAAUUGCCGGAUUGGCAAACAAAUGUUGAACAAAUACGUAGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAU ........((((...-......(((((((((((((.........(((((.....)))))........)))))).....))))).))(((((((....))))))).........))))... ( -26.23) >DroEre_CAF1 55019 117 + 1 AUAUG--CUGCACUUUUUAUUGCCCUUUUUGUUCACUGAAA-AAUUGCCGGAUUGGCAAACAAAUGUUGAACAAAUACGUAGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAU .....--.((((.......(((((...((((((((......-..(((((.....)))))........))))))))......)))))(((((((....))))))).........))))... ( -29.89) >DroYak_CAF1 60038 119 + 1 AUAUGAACUGCUCUUUUUAUUUCUCUUUUUGUUCACUGAAA-AAUUGCCGGAUUGGCAAACAAAUGUUGAACAAAUACAUAGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAU .......((((.((.............((((((((......-..(((((.....)))))........)))))))).....))))))(((((((....)))))))................ ( -24.46) >consensus AUAUGAACUGCACUU_UUAUUUCCCUUUUUGUUCACUGAAA_AAUUGCCGGAUUGGCAAACAAAUGUUGAACAAAUACGUAGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAU .........((...........((((.((((((((.........(((((.....)))))........)))))))).....))).).(((((((....)))))))..........)).... (-23.99 = -24.05 + 0.06)
Location | 1,438,477 – 1,438,596 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.99 |
Mean single sequence MFE | -32.94 |
Consensus MFE | -29.83 |
Energy contribution | -30.45 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.06 |
Mean z-score | -3.03 |
Structure conservation index | 0.91 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1438477 119 - 20766785 AUUUGCAUUUAAUUUUCGAUUGCGUUGGCAAUCGCCGCCUACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUUUUUUCAGUGAACAAAAAGGGAAAUAA-AAGUGCUGUUCAUAU ....((((((.((((((...(((((.(((.......))).)))))((((((((........(((((.....))))).........))))))))...))))))..-))))))......... ( -32.63) >DroSec_CAF1 55850 119 - 1 AUUUGCAUUUAAUUUUCGAUUGCGUUGGCAAUCGCCGCCUACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUUGUUUCAGUGAACAAUAAGGGAAAUAA-GAGUGCAGUUCAUAU ..((((((((.((((((...(((((.(((.......))).))))).(((((((........(((((.....))))).........)))))))....))))))..-))))))))....... ( -33.63) >DroEre_CAF1 55019 117 - 1 AUUUGCAUUUAAUUUUCGAUUGCGUUGGCAAUCGCCGCCUACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUU-UUUCAGUGAACAAAAAGGGCAAUAAAAAGUGCAG--CAUAU ..((((((((......(((((((....)))))))..((((.....((((((((........(((((.....)))))..-......))))))))..))))......))))))))--..... ( -36.19) >DroYak_CAF1 60038 119 - 1 AUUUGCAUUUAAUUUUCGAUUGCGUUGGCAAUCGCCGCCUAUGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUU-UUUCAGUGAACAAAAAGAGAAAUAAAAAGAGCAGUUCAUAU ..((((.((((.(((((((((((....))))))............((((((((........(((((.....)))))..-......))))))))..))))).))))....))))....... ( -29.29) >consensus AUUUGCAUUUAAUUUUCGAUUGCGUUGGCAAUCGCCGCCUACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUU_UUUCAGUGAACAAAAAGGGAAAUAA_AAGUGCAGUUCAUAU ..((((((((...((((...(((((.(((.......))).)))))((((((((........(((((.....))))).........))))))))....))))....))))))))....... (-29.83 = -30.45 + 0.63)
Location | 1,438,516 – 1,438,636 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.05 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -28.91 |
Energy contribution | -28.98 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.61 |
Structure conservation index | 0.97 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1438516 120 + 20766785 AAAAUUGCCGGAUUGGCAAACAAAUGUUGAACAAAUACGUAGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAUGCAAUCAUGAAAUGCGUCAAUGUUUUGGCAACUGAACAAA ....(((((((((..(((......)))..)......((((.((((.(((((((....))))))).........(((....)))...........)))).))))))))))))......... ( -30.10) >DroSec_CAF1 55889 120 + 1 ACAAUUGCCGGAUUGGCAAACAAAUGUUGAACAAAUACGUAGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAUGCAAUCAUGGAAUGCGUCAAUGUUUUGGCAACUGAACAAA .((.(((((((((..(((......)))..)......((((.((((.(((((((....))))))).........(((....)))...........)))).)))))))))))).))...... ( -31.80) >DroEre_CAF1 55057 119 + 1 A-AAUUGCCGGAUUGGCAAACAAAUGUUGAACAAAUACGUAGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAUGCAAUCAUGGAAUGCAUCAAUGUUUUGGCAACUGAACAAA .-..(((((.....)))))......(((((............(((.(((((((....))))))).........)))...((((.((...)).)))))))))((((.(....).))))... ( -26.40) >DroYak_CAF1 60078 119 + 1 A-AAUUGCCGGAUUGGCAAACAAAUGUUGAACAAAUACAUAGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAUGCAAUCAUGGAAUGCGUCAAUGUUUUGGCAACUGAACAAA .-..(((((((((..(((......)))..)......((((.((((.(((((((....))))))).........(((....)))...........)))).))))))))))))......... ( -30.50) >consensus A_AAUUGCCGGAUUGGCAAACAAAUGUUGAACAAAUACGUAGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAUGCAAUCAUGGAAUGCGUCAAUGUUUUGGCAACUGAACAAA ....(((((((((..(((......)))..)......((((.((((.(((((((....))))))).........(((....)))...........)))).))))))))))))......... (-28.91 = -28.98 + 0.06)
Location | 1,438,516 – 1,438,636 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.05 |
Mean single sequence MFE | -28.39 |
Consensus MFE | -26.56 |
Energy contribution | -26.37 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -2.11 |
Structure conservation index | 0.94 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834368 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1438516 120 - 20766785 UUUGUUCAGUUGCCAAAACAUUGACGCAUUUCAUGAUUGCAUUUGCAUUUAAUUUUCGAUUGCGUUGGCAAUCGCCGCCUACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUUUU .......(((((((.......(((......))).(((((((...(((.........(((.(((((.(((.......))).))))).))).........))).)).))))).))))))).. ( -27.87) >DroSec_CAF1 55889 120 - 1 UUUGUUCAGUUGCCAAAACAUUGACGCAUUCCAUGAUUGCAUUUGCAUUUAAUUUUCGAUUGCGUUGGCAAUCGCCGCCUACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUUGU ......((((((((.......((........)).(((((((...(((.........(((.(((((.(((.......))).))))).))).........))).)).))))).)))))))). ( -29.47) >DroEre_CAF1 55057 119 - 1 UUUGUUCAGUUGCCAAAACAUUGAUGCAUUCCAUGAUUGCAUUUGCAUUUAAUUUUCGAUUGCGUUGGCAAUCGCCGCCUACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUU-U .......(((((((........((((((.((...)).)))))).(((..(((....(((.(((((.(((.......))).))))).)))........)))..)))......)))))))-. ( -28.70) >DroYak_CAF1 60078 119 - 1 UUUGUUCAGUUGCCAAAACAUUGACGCAUUCCAUGAUUGCAUUUGCAUUUAAUUUUCGAUUGCGUUGGCAAUCGCCGCCUAUGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUU-U ........((((.((((((((.((((((.((..(((.(((....))).)))......)).))))))(((....)))....)))).))))..))))......(((((.....)))))..-. ( -27.50) >consensus UUUGUUCAGUUGCCAAAACAUUGACGCAUUCCAUGAUUGCAUUUGCAUUUAAUUUUCGAUUGCGUUGGCAAUCGCCGCCUACGUAUUUGUUCAACAUUUGUUUGCCAAUCCGGCAAUU_U .......(((((((.......((........)).(((((((...(((.........(((.(((((.(((.......))).))))).))).........))).)).))))).))))))).. (-26.56 = -26.37 + -0.19)
Location | 1,438,556 – 1,438,676 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -26.62 |
Consensus MFE | -25.96 |
Energy contribution | -25.40 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -2.63 |
Structure conservation index | 0.98 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1438556 120 + 20766785 AGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAUGCAAUCAUGAAAUGCGUCAAUGUUUUGGCAACUGAACAAAUGUAAUUUAGUAAAAUAAACUUUACAAAUGCGCAAACUAA .((((.(((((((....))))))).........(((....)))...........))))..(((((.(....).)))))..(((.((((.(((((......)))))))))..)))...... ( -26.40) >DroSec_CAF1 55929 120 + 1 AGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAUGCAAUCAUGGAAUGCGUCAAUGUUUUGGCAACUGAACAAAUGUAAUUUAGUAAAAUAAACUUUACAACUGCGCAAACUAA ..(((((((((((....)))))))...((((((((((.(((((.((...)).)))))...(((((.(....).)))))..))).)))))))................))))......... ( -26.80) >DroEre_CAF1 55096 120 + 1 AGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAUGCAAUCAUGGAAUGCAUCAAUGUUUUGGCAACUGAACAAAUGUAAUUUAGUAAAAUAAACUUUACAAAUGCGCAAACUAA ..(((.(((((((....)))))))...((((((((((.(((((.((...)).)))))...(((((.(....).)))))..))).)))))))...................)))....... ( -26.70) >DroYak_CAF1 60117 120 + 1 AGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAUGCAAUCAUGGAAUGCGUCAAUGUUUUGGCAACUGAACAAAUGUAAUUUAGUAAAAUAAACUUUACAAAUGUGCAAACUAA .((((.(((((((....))))))).........(((....)))...........))))..(((((.(....).)))))..((((((((.(((((......))))))))).))))...... ( -26.60) >consensus AGGCGGCGAUUGCCAACGCAAUCGAAAAUUAAAUGCAAAUGCAAUCAUGGAAUGCGUCAAUGUUUUGGCAACUGAACAAAUGUAAUUUAGUAAAAUAAACUUUACAAAUGCGCAAACUAA ..(((.(((((((....))))))).........(((....)))....((((.(((((...(((((.(....).))))).))))).))))(((((......))))).....)))....... (-25.96 = -25.40 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:33 2006