Locus 1819

Sequence ID 2R_DroMel_CAF1
Location 6,794,180 – 6,794,280
Length 100
Max. P 0.696493
window3018

overview

Window 8

Location 6,794,180 – 6,794,280
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.73
Mean single sequence MFE -28.30
Consensus MFE -19.96
Energy contribution -20.27
Covariance contribution 0.31
Combinations/Pair 1.19
Mean z-score -1.69
Structure conservation index 0.71
SVM decision value 0.34
SVM RNA-class probability 0.696493
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6794180 100 + 20766785
ACAUUGGCAUCUUCGUUGGCGAGGGCGACGGCCAACAGGCAGGCGAAAGCAAUCUACA----AGGAUUGUAAAUAACAAAUCAGCUAGAAUCAUUAAAGGAUCA
...(((((...(((((..((...(((....))).....))..))))).(((((((...----.))))))).............)))))................ ( -24.00)
>DroSec_CAF1 291 100 + 1
AUAUUGGCAUCUUCGUUGGCGACGGCGACGGCCAACAGACAGGCGAAAGCAAUCUACA----AGGAUUGUAAAUAACCAAUCAGCUAGAAUCCUUUAAGGAUCA
...(((((..(((.((((((..((....))))))))(((...((....))..)))..)----))(((((........))))).))))).((((.....)))).. ( -29.00)
>DroSim_CAF1 290 100 + 1
ACAUUGGCAUCUUCGUUGGCGACGGCGACGGCCAACAGGCAGGCGAAAGCAAUCUACA----AGGAUUGUAAAUAACCAAUCAGCUAGAAUCCUUUAAGGAUCA
...(((((....((((((....))))))..)))))..(((..((....))........----..(((((........))))).))).((.(((.....))))). ( -29.90)
>DroEre_CAF1 290 92 + 1
ACACCGGCGUCUUCGUUGGCGAGGGCGACGGCCAACAGGCAGGCGAAAGCAAUCUACA----AGGAUUGUAAAUA--------GCUAGAAUCCUUUAAGGAUCA
....((.((((((((....)))))))).))(((....)))..((....)).((((..(----((((((.((....--------..)).)))))))...)))).. ( -32.40)
>DroYak_CAF1 290 96 + 1
ACAUUGGCGUUUUCGUUGGCGAGGGCGACGGCCAACAGGCAGGCGAAGGCAAUCUACA----AAGAUUGUAAUUA----AUCAACUAGUAUCCUGAAAGGAUCA
..(((((.((((((((..((...(((....))).....))..))))))))........----..(((((....))----)))..)))))((((.....)))).. ( -25.10)
>DroPer_CAF1 291 102 + 1
ACAUUGGCAUCCUCGUUGGCGUAGGCCACAGCCAGCAGGCAGGCGAAAGCAAUCUAUUGUGGGGAAUCGG--AGAACAAGUUAGCCAUUAUCCUGUUAGGAAUC
....((((.(((((((((((..........))))))(((...((....))..))).....)))))...(.--....)......))))...(((.....)))... ( -29.40)
>consensus
ACAUUGGCAUCUUCGUUGGCGAGGGCGACGGCCAACAGGCAGGCGAAAGCAAUCUACA____AGGAUUGUAAAUAAC_AAUCAGCUAGAAUCCUUUAAGGAUCA
...(((((......((((((...(....).))))))(((...((....))..)))............................))))).((((.....)))).. (-19.96 = -20.27 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:53 2006