Locus 1818

Sequence ID 2R_DroMel_CAF1
Location 6,793,051 – 6,793,165
Length 114
Max. P 0.707533
window3017

overview

Window 7

Location 6,793,051 – 6,793,165
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.25
Mean single sequence MFE -37.10
Consensus MFE -23.65
Energy contribution -24.74
Covariance contribution 1.09
Combinations/Pair 1.23
Mean z-score -1.71
Structure conservation index 0.64
SVM decision value 0.37
SVM RNA-class probability 0.707533
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6793051 114 + 20766785
CCGAA------UCAGAAUCAGAAUGCCGAUUUGGCGGCAAAUCGGUAACCGGAGCGCGCAGGCUUUUCAAUGUUAUUUUGACAUUUGAGAGCCGACGAUGGUUAGCCUUGAUCGUUGGCG
(((..------((.......)).((((((((((....))))))))))..)))....(((.(((((((.((((((.....)))))).)))))))..(((((((((....)))))))))))) ( -39.70)
>DroSec_CAF1 43122 114 + 1
CCAAA------UCAGAACCAGAAUGCCGAUUUGGCGGCAAAUCGGUAACCGGAGCGCGCAGGCUUUUCAAUGUUAUUUUGACAUUUGAGAGCAGACGAUGGUUAGCCUUGAUCGUCGGCG
.....------...(..((.(..((((((((((....))))))))))..)))..).(((..((((((.((((((.....)))))).))))))...(((((((((....)))))))))))) ( -37.40)
>DroSim_CAF1 52060 109 + 1
-----------UCAGAAUCAGAAUGCCGAUUUGGCGGCAAAUCGGUAACCGGAGCGCGCAGGCUUUUCAAUGUUAUUUUGACAUUUGAGAGCCGACGAUGGUUAGCCUUGAUCGUCGGCG
-----------(((((.((((((((((((((((....))))))))))...((((.((....)).)))).......))))))..)))))..(((((((((((....))...))))))))). ( -40.60)
>DroEre_CAF1 50712 112 + 1
CAGAAUCAA------AAUCAUAGUGACGACUUGGCGGCGAAUCGGCAAACGGAGC--GCAAGCUUUUCAAUGUUUUUUUGACAUUUGAGAGCCGACGCGGCUUAGCCUUGAUCGUCGGCG
.........------.......((((((((..((((.((..(((((......(((--....)))((((((((((.....)))).)))))))))))..)).)...)))..).))))).)). ( -37.50)
>DroYak_CAF1 51035 118 + 1
UAGAAUCAAAAUCAGAAUCAUAAUGACGAUUUGGCGGCUAAUCGGUAACCGGAGC--GCAAGCUUUUCAAUGUUAUUUUGACAUUUGAGAGCCGACGAGGCUUAGCCUUGAUCGUCGGCG
.....(((((.(((((((.(((.((((((((........)))))......(((((--....)))))))).))).)))))))..)))))..(((((((((((...)))....)))))))). ( -38.70)
>DroPer_CAF1 40515 104 + 1
--------------GAAUCAACGGGUUUCUUUUUAGUCGAAUCGGUAACCGGAGC--GCCAGAGUUUCAAUGUUAUUUUGACAUUUGUGUGGCGGCGAGGUCUAGCCUUGAUCGUCGCCA
--------------(((((....))))).......((((((...(((((.(((((--......)))))...)))))))))))...((.((((((((((((.....))))).))))))))) ( -28.70)
>consensus
C_GAA______UCAGAAUCAGAAUGCCGAUUUGGCGGCAAAUCGGUAACCGGAGC__GCAAGCUUUUCAAUGUUAUUUUGACAUUUGAGAGCCGACGAGGGUUAGCCUUGAUCGUCGGCG
.................((....((((((((((....))))))))))....))...........((((((((((.....)))).))))))((((((((.............)))))))). (-23.65 = -24.74 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:52 2006