Locus 1816

Sequence ID 2R_DroMel_CAF1
Location 6,790,575 – 6,790,695
Length 120
Max. P 0.987228
window3014

overview

Window 4

Location 6,790,575 – 6,790,695
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.17
Mean single sequence MFE -43.27
Consensus MFE -40.78
Energy contribution -40.87
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.58
Structure conservation index 0.94
SVM decision value 2.07
SVM RNA-class probability 0.987228
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6790575 120 - 20766785
CAAGUUCAUCGUAGAGGAGGAUGAUGAGGCCAUGCAGAAGGAGCUGCGCGAGGCUUUCCGUCUGUACGACAAGCAGGGCAAUGGCUACAUUCCCACCUCCUGCCUGAAGGAGAUCCUCAA
.............(((((((..((((.((((((((((......))))((...((((..(((....)))..))))...)).)))))).)))).))..(((((......))))).))))).. ( -42.20)
>DroPse_CAF1 38779 120 - 1
CAAAUUCAUCGUCGAGGAGGAUGACGAGGCCAUGCAGAAGGAACUGCGUGAGGCCUUCCGUCUAUACGACAAGCAGGGCAAUGGCUACAUUCCCACCUCCUGUCUGAAGGAGAUUCUGAA
....((((..((((....(((((..((((((((((((......))))))..)))))).)))))...)))).....(((.((((....)))))))..(((((......)))))....)))) ( -41.80)
>DroSim_CAF1 49628 120 - 1
CAAGUUCAUCGUGGAGGAGGAUGACGAGGCCAUGCAGAAGGAGCUGCGCGAGGCUUUCCGCCUGUACGACAAGCAGGGCAAUGGCUACAUUCCCACCUCCUGCCUGAAGGAGAUCCUCAA
...(((..(((((.(((.(((.....(((((.(((((......)))))...)))))))).))).)))))..))).(((.((((....)))))))..(((((......)))))........ ( -43.70)
>DroEre_CAF1 48414 120 - 1
CAAGUUCAUCGUGGAGGAGGAUGACGAGGCCAUGCAGAAGGAGCUGCGCGAGGCUUUCCGCCUGUACGACAAGCAGGGCAAUGGCUACAUUCCCACCUCCUGCCUGAAGGAGAUCCUCAA
...(((..(((((.(((.(((.....(((((.(((((......)))))...)))))))).))).)))))..))).(((.((((....)))))))..(((((......)))))........ ( -43.70)
>DroYak_CAF1 48572 120 - 1
CAAGUUCAUCGUGGAGGAGGAUGACGAGGCCAUGCAGAAGGAGCUGCGCGAGGCCUUCCGCCUGUACGACAAGCAGGGCAAUGGCUACAUUCCCACCUCCUGCCUGAAGGAGAUCCUCAA
...(((..(((((.(((.(((.....(((((.(((((......)))))...)))))))).))).)))))..))).(((.((((....)))))))..(((((......)))))........ ( -46.40)
>DroPer_CAF1 38553 120 - 1
CAAAUUCAUCGUCGAGGAGGAUGACGAGGCCAUGCAGAAGGAACUGCGUGAGGCCUUCCGUCUAUACGACAAGCAGGGCAAUGGCUACAUUCCCACCUCCUGUCUGAAGGAGAUCCUGAA
....((((..((((....(((((..((((((((((((......))))))..)))))).)))))...)))).....(((.((((....)))))))..(((((......)))))....)))) ( -41.80)
>consensus
CAAGUUCAUCGUGGAGGAGGAUGACGAGGCCAUGCAGAAGGAGCUGCGCGAGGCCUUCCGCCUGUACGACAAGCAGGGCAAUGGCUACAUUCCCACCUCCUGCCUGAAGGAGAUCCUCAA
...(((..(((((.(((.(((.....(((((.(((((......)))))...)))))))).))).)))))..))).(((.((((....)))))))..(((((......)))))........ (-40.78 = -40.87 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:49 2006