Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,788,876 – 6,788,971 |
Length | 95 |
Max. P | 0.946608 |
Location | 6,788,876 – 6,788,971 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 89.60 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -22.58 |
Energy contribution | -23.33 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.22 |
Structure conservation index | 0.84 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6788876 95 + 20766785 UAAAAAUUAGCAAGCAA------GCAACUGCUGCUGGUGGUGCUCGUAAAUUGGAAUCCAAUCGAAACGCUCAACGCUCGAGCGCAUCAUCAUCAUUCA------GC ........((((.(((.------.....)))))))(((((((((((...(((((...))))))))...((((.......))))))))))))........------.. ( -27.60) >DroSec_CAF1 39024 95 + 1 UAAAAAUUAGCAAGCAA------GCAACUGCUGCUGGUGGUGCUCGUAAAUUGGAAUCCAAUCGAAACGCUCAACGCUCGAGCGCAUCAUCAUCAUUCA------GC ........((((.(((.------.....)))))))(((((((((((...(((((...))))))))...((((.......))))))))))))........------.. ( -27.60) >DroSim_CAF1 47937 95 + 1 UAAAAAUUAGCAAGCAA------GCAACUGCUGCUGGUGGUGCUCGUAAAUUGGAAUCCAAUCGAAACGCUCAACGCUCGAGCGCAUCAUCAUCAUUCA------GC ........((((.(((.------.....)))))))(((((((((((...(((((...))))))))...((((.......))))))))))))........------.. ( -27.60) >DroYak_CAF1 46800 100 + 1 UAAAAAUUAGCAAGCAACUGCUG-------CUGCUGGUGGUGCUCGUAAAUUGGAUUCCAAUCGAAACCCUCAACGCUCGAGCGCAUCAUCAUCAUUCAGCUUCAGC .................(((..(-------(((.((((((((((((...(((((...))))))))..........((....))))))))))).....))))..))). ( -24.80) >consensus UAAAAAUUAGCAAGCAA______GCAACUGCUGCUGGUGGUGCUCGUAAAUUGGAAUCCAAUCGAAACGCUCAACGCUCGAGCGCAUCAUCAUCAUUCA______GC ........((((.(((............)))))))(((((((((((...(((((...))))))))...((((.......))))))))))))................ (-22.58 = -23.33 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:39 2006