Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,787,657 – 6,787,761 |
Length | 104 |
Max. P | 0.839658 |
Location | 6,787,657 – 6,787,761 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 85.17 |
Mean single sequence MFE | -31.14 |
Consensus MFE | -22.82 |
Energy contribution | -23.58 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.11 |
Mean z-score | -2.05 |
Structure conservation index | 0.73 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.839658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6787657 104 + 20766785 CGGAUAUGCUAAGUGCAAUGGGGAAACCCUUGGCUGUGCUAAAAUAUCCAAGAUGGGACACUCCAGUGGCCUAUUGUUUAGGCAUGUUCUUU------UUCGCGGAAUUU .(((((((((.((..((..(((....))).....))..))...........((((((.(((....))).)))))).....)))))))))...------............ ( -32.90) >DroSec_CAF1 37804 102 + 1 CGGAUAUGCUAAGUGCAAUGAGGAAACCCUUGUCUAU--UUAGCACUCCAAGAUGGGACACUCCAGUGGCCUAUUUUUUAGGCAUGUUCUUU------UUCACAGAAUUU .(((((((((.(((((.(..(((....)))..)....--...)))))..((((((((.(((....))).))))))))...)))))))))...------............ ( -29.00) >DroSim_CAF1 46728 102 + 1 CGGAUAUGCUAAGUGCAAAGGGGAAACCCUUGGCUAU--UUAGCACUCCAAGAUGGGACACUCCAGUGGCCUAUUGUUUAGGCAUGUUCUUU------UUCGCGGAAUUU ......((((((((((.(((((....))))).)).))--)))))).(((..((.(((((((......)(((((.....))))).))))))..------.))..))).... ( -37.90) >DroEre_CAF1 40254 108 + 1 CGGAUAUGCUAAGUGCAGUGGGGAAACCCUUGGCUAU--CUAACACUCCAAGAUGGGACACUCCACUGGUCUAUUGUUUAAACAUGUUCUUGGAACUCAACGUGGAAUUU .(((((.(((((.......(((....)))))))))))--))..((((((((((..((((.(......)))))..(((....)))...))))))).......)))...... ( -27.02) >DroYak_CAF1 45568 99 + 1 UGGAUAUGCUAAGUGCAAUGGGGAAACCCUUGGCUAU--UUAGCACUCCAAGAUGGGACACUCCACUGGUCUAUUGUUUGAACACGUUCUUU------UUCGCAGAA--- ((((..((((((((((...(((....)))...)).))--)))))).))))((((.((........)).)))).((((..(((........))------)..))))..--- ( -28.90) >consensus CGGAUAUGCUAAGUGCAAUGGGGAAACCCUUGGCUAU__UUAGCACUCCAAGAUGGGACACUCCAGUGGCCUAUUGUUUAGGCAUGUUCUUU______UUCGCGGAAUUU .(((((((((.(((.(((.(((....)))))))))................((((((.(((....))).)))))).....)))))))))..................... (-22.82 = -23.58 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:38 2006