Locus 181

Sequence ID 2R_DroMel_CAF1
Location 1,437,397 – 1,437,517
Length 120
Max. P 0.636407
window407

overview

Window 7

Location 1,437,397 – 1,437,517
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.06
Mean single sequence MFE -41.88
Consensus MFE -36.65
Energy contribution -37.27
Covariance contribution 0.62
Combinations/Pair 1.14
Mean z-score -1.51
Structure conservation index 0.88
SVM decision value 0.21
SVM RNA-class probability 0.636407
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1437397 120 - 20766785
GGCAUUACAUAGACUGUGCUAACAGUGUUCUGAACUCGACCGAAGGAAACGACGGUGGCGUCCAGGCUGGGUUCAUACCCUGCCAAGAAGCCGGAACGGUACAACACUGCUGGAAUAGGC
.............((((.(((.((((((..((.((.((((((..(....)..))))(((.((..(((.((((....)))).)))..)).)))....)))).)))))))).))).)))).. ( -43.50)
>DroSec_CAF1 54770 120 - 1
GGCAUUACAUAGACUGUGCUAACAGUGUUCUCAACUCGACCGAAGGAAACGAUGGUGGCGUCCAGGCUGGGUUCAUACCCUGCCAAGAAGCCGGAACGGUACAACACUGCUGGAAUAGGC
.............((((.(((.(((((((....((.((((((..(....)..))))(((.((..(((.((((....)))).)))..)).)))....))))..))))))).))).)))).. ( -40.60)
>DroEre_CAF1 53940 120 - 1
GGCAUUACAUAGACUGUGCUAACUGUGUUUUGAACUCGACCGAAGGAUACGACGGUGGCGUCCAGGUUGGGUUCGUAGCCCGCCAAGAAGCCGGAACGGUAGAGCACUGCUGGAAUGGGC
..((((...(((...(((((.((((((((.(((((((((((...(((..(.......)..))).))))))))))).)))(((.(.....).))).)))))..)))))..))).))))... ( -40.60)
>DroYak_CAF1 58958 120 - 1
GGCAUUACAUAGACUGUGCUAACAGUGUUCUGAACUCGACCAAAGGAAACGACGGUGGCAUCCAGGUUGGGUUCAUAGCCCGCCAAGAAGCCGGAACGGUAGAGCACUGCUGGAAUAGGG
.............((((.(((.(((((((((((((((((((...(....)...((......)).))))))))))...(((..((........))...)))))))))))).))).)))).. ( -42.80)
>consensus
GGCAUUACAUAGACUGUGCUAACAGUGUUCUGAACUCGACCGAAGGAAACGACGGUGGCGUCCAGGCUGGGUUCAUACCCCGCCAAGAAGCCGGAACGGUACAACACUGCUGGAAUAGGC
.............((((.(((.(((((((((..((.((((((..(....)..))))(((.((..(((.((((....)))).)))..)).)))....))))))))))))).))).)))).. (-36.65 = -37.27 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:24 2006