Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,786,811 – 6,786,909 |
Length | 98 |
Max. P | 0.972424 |
Location | 6,786,811 – 6,786,909 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 90.66 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -24.53 |
Energy contribution | -25.41 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -2.15 |
Structure conservation index | 0.73 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6786811 98 + 20766785 GUGGGUAUCAUGACCCCGCCGCUGGGAACCUCCAAAGGGGUCAAGAGUGUGGCCAAAUGUCGGCCAUUUCAUCAAUGAAGC---AUUUGUCCAUUGACAGA ....((.((((((((((.....((((....))))..))))))..((..((((((.......))))))....)).)))).))---.((((((....)))))) ( -33.10) >DroSec_CAF1 36961 95 + 1 GUGGGUAUCAUGACCCC---GCUGGGAACCUCCAAAGGGGUCAAGAGUGUGGCCAAAUGUCGGCCAUUUCAUCAAUGAAGC---AUAUGGCCAUUGACAGA ...(((.((.(((((((---..((((....))))..))))))).)).....)))...((((((((((((((....))))..---..))))))...)))).. ( -35.90) >DroSim_CAF1 45885 95 + 1 GUGGGUAUCAUGACCCC---GCUGGGAGCCUCCAAAGGGGUCAAGAGUGUGGCCAAAUGUCGGCCAUUUCAUCAAUGAAGC---AUUUGGCCAUUGACAGA .......((.(((((((---..((((....))))..))))))).))((((((((((((((....((((.....))))..))---))))))))))..))... ( -37.70) >DroEre_CAF1 39410 98 + 1 GUGGGUAUCAUGACCCC---GCCUGCAACCUCCAAAGGGGUCAAGAGUGUGGCCAAAUGUCGGCCAACUCAUCAAUGAAGACGAUGUUGGCCAUUGACUGA ...(((.((.(((((((---................))))))).)).....)))....((((((((((((.((......)).)).)))))))...)))... ( -33.29) >DroYak_CAF1 44702 95 + 1 GUGGGCAUCAUGACCUC---GCUCGGAACCUCCAAAGGGGUCAAGAGUGUAGCCAAAUGUCGGCCAUUUCAUCAAUGAAGC---AUUCGGCCAUUGACAGA ((((.(....(((((((---....((.....))...))))))).((((((.(((.......)))...((((....))))))---))))).))))....... ( -29.00) >consensus GUGGGUAUCAUGACCCC___GCUGGGAACCUCCAAAGGGGUCAAGAGUGUGGCCAAAUGUCGGCCAUUUCAUCAAUGAAGC___AUUUGGCCAUUGACAGA ...(((.((.(((((((.......((.....))...))))))).)).....)))...((((((((((((((....))))).......)))))...)))).. (-24.53 = -25.41 + 0.88)
Location | 6,786,811 – 6,786,909 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.66 |
Mean single sequence MFE | -34.60 |
Consensus MFE | -26.24 |
Energy contribution | -26.52 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -2.78 |
Structure conservation index | 0.76 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6786811 98 - 20766785 UCUGUCAAUGGACAAAU---GCUUCAUUGAUGAAAUGGCCGACAUUUGGCCACACUCUUGACCCCUUUGGAGGUUCCCAGCGGCGGGGUCAUGAUACCCAC ...((((((((((....---).)))))))))....(((((((...)))))))...((.(((((((.((((......))))....))))))).))....... ( -32.90) >DroSec_CAF1 36961 95 - 1 UCUGUCAAUGGCCAUAU---GCUUCAUUGAUGAAAUGGCCGACAUUUGGCCACACUCUUGACCCCUUUGGAGGUUCCCAGC---GGGGUCAUGAUACCCAC ..(((((.((((((.((---((.(((((.....)))))..).))).))))))......(((((((.((((......)))).---))))))))))))..... ( -35.10) >DroSim_CAF1 45885 95 - 1 UCUGUCAAUGGCCAAAU---GCUUCAUUGAUGAAAUGGCCGACAUUUGGCCACACUCUUGACCCCUUUGGAGGCUCCCAGC---GGGGUCAUGAUACCCAC ..(((((.(((((((((---((.(((((.....)))))..).))))))))))......(((((((.((((......)))).---))))))))))))..... ( -38.40) >DroEre_CAF1 39410 98 - 1 UCAGUCAAUGGCCAACAUCGUCUUCAUUGAUGAGUUGGCCGACAUUUGGCCACACUCUUGACCCCUUUGGAGGUUGCAGGC---GGGGUCAUGAUACCCAC ...(((((((((((((.(((((......)))))))))))))....))))).....((.(((((((((((.......)))).---))))))).))....... ( -37.60) >DroYak_CAF1 44702 95 - 1 UCUGUCAAUGGCCGAAU---GCUUCAUUGAUGAAAUGGCCGACAUUUGGCUACACUCUUGACCCCUUUGGAGGUUCCGAGC---GAGGUCAUGAUGCCCAC ...((((.(((((((((---((.(((((.....)))))..).))))))))))......((((((.(((((.....))))).---).)))))))))...... ( -29.00) >consensus UCUGUCAAUGGCCAAAU___GCUUCAUUGAUGAAAUGGCCGACAUUUGGCCACACUCUUGACCCCUUUGGAGGUUCCCAGC___GGGGUCAUGAUACCCAC ...((((((((............))))))))....(((((((...)))))))...((.(((((((.((((......))))....))))))).))....... (-26.24 = -26.52 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:37 2006