| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,761,952 – 6,762,042 |
| Length | 90 |
| Max. P | 0.838132 |
| Location | 6,761,952 – 6,762,042 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 73.12 |
| Mean single sequence MFE | -23.92 |
| Consensus MFE | -9.62 |
| Energy contribution | -9.85 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6761952 90 + 20766785 CGACUCUG-UCUUUGGAUCUCUGGAUCGAAUAAAAGACCGCAGCUUUGGUUCCAAAAGUUACAGUUGCACAAAGCAAAG-----------AUCCAAGCACAA ......((-(.(((((((((..((.((........))))...((((((((..(..........)..)).))))))..))-----------))))))).))). ( -23.90) >DroSec_CAF1 12452 81 + 1 CGAU-----AUUUUGGAUCUCGGGAUCGAAUAAAAGACCGCAGCUUUGGUUCCAAAAGUUACAGUUGCACAUAGCAAAG-----------AUCCAAG----- ....-----...((((((((.(((((((((..............)))))))))...........((((.....))))))-----------)))))).----- ( -20.94) >DroSim_CAF1 15490 85 + 1 C-AU-----UCUUUGGAUCUCGGGAUCGAAUAAAAGACCGCAGCUUUGGUUUCAAAAGUUACAGUUGCACAUAGCAAAG-----------AUCCAAGCACAA .-..-----..(((((((((..((.((........))))((((((.(..((.....))..).)))))).........))-----------)))))))..... ( -20.20) >DroEre_CAF1 12354 86 + 1 CGAU-----UCUUUGGGUCGCUGGAUCCAAUAAAAGGCCACAGCCUUGGUUCCAAAAAUGACAGUUGCACAUAGCAAAG-----------AUCCAAGCACAA ....-----..((((((((..((((.(((.....((((....))))))).))))..........((((.....)))).)-----------)))))))..... ( -24.20) >DroYak_CAF1 15280 86 + 1 CGAU-----UCUUUGGAUCUCUAGAUCGAAUAAAAGACCGCAGCUUUGGUUCCGAAAAUAACAGUUGCACAUAGCAAAG-----------AUCCAAGCACAA ....-----..(((((((((((((.((........)).)((((((...(((.....)))...))))))...)))...))-----------)))))))..... ( -17.80) >DroPer_CAF1 12839 99 + 1 UGUGUGUGCUCCAGGGACUGCU-GGCCAAAUAAAAGGCCGGUGCCUGGGCUCAACGAUCAACAGUUGCUCGCAGCACAACGCACUCAAUCAUCCAGUGAU-- (((((((((((((((...((((-((((........)))))))))))))((.((((........))))...))))))).)))))....(((((...)))))-- ( -36.50) >consensus CGAU_____UCUUUGGAUCUCUGGAUCGAAUAAAAGACCGCAGCUUUGGUUCCAAAAGUUACAGUUGCACAUAGCAAAG___________AUCCAAGCACAA ............((((((.................(((((......))))).............((((.....)))).............))))))...... ( -9.62 = -9.85 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:34 2006