Locus 1806

Sequence ID 2R_DroMel_CAF1
Location 6,759,594 – 6,759,688
Length 94
Max. P 0.997525
window2996

overview

Window 6

Location 6,759,594 – 6,759,688
Length 94
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 77.42
Mean single sequence MFE -27.12
Consensus MFE -15.03
Energy contribution -15.51
Covariance contribution 0.48
Combinations/Pair 1.14
Mean z-score -2.86
Structure conservation index 0.55
SVM decision value 2.88
SVM RNA-class probability 0.997525
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6759594 94 + 20766785
AAUCCCAGAAGCACCUGGAAACAGAAAA-------UGGGAAGACUCC-GCUCUUAUACACAGCGUAUAAGAUGAUUCACC---U----GGCGAACGUCUAUAGUGAAAU
..(((((.......(((....)))....-------)))))......(-(.((((((((.....)))))))))).(((((.---.----(((....)))....))))).. ( -25.90)
>DroSec_CAF1 10158 91 + 1
---------AACACCUGGAAACAGAAAC-------UGGGAAGACUCCGGCUCUUAUACACCGCGUAUAAGAUGAUUCACCAUCUGACAUGCGAACGCCU--GGUGGAAU
---------..((((.((....(((..(-------((((.....))))).))).......(((((...(((((......)))))...)))))....)).--)))).... ( -25.00)
>DroSim_CAF1 13135 99 + 1
AAUCCCAUCAGCACCUGGAAACAGAAAA-------UGGGAAGACUCC-GCUCUUAUACACCGCGUAUAAGAUGAAUCACCAUCUGUCAUGCGCACGCCU--AGUGGAAU
..((((((......(((....)))...)-------)))))....(((-(((..........((((((.(((((......)))))...))))))......--)))))).. ( -29.79)
>DroEre_CAF1 10044 84 + 1
AUUCCCA-AAGCAUCUGGAAACAGAAAA-------UGGGAAGACUUC-GCUCUUAUACGCCGCGUAUAAGAUGAUUCACAAUU--------------AU--AGUUGAAU
.((((((-.....((((....))))...-------))))))((..((-(.(((((((((...)))))))))))).)).((((.--------------..--.))))... ( -26.20)
>DroYak_CAF1 12942 105 + 1
GUUCCCA-AAGCACCUGGAAACAGAAAACAGAAACUGGGAAGACUCC-GCUCUUAUACACCGCGUAUAAGAUGAUUCACAAUCUGUCACGCGAACGCCU--AGUGGAAU
(((((..-......(((....))).........((((((((((....-..))))......(((((...((((........))))...)))))....)))--)))))))) ( -28.70)
>consensus
AAUCCCA_AAGCACCUGGAAACAGAAAA_______UGGGAAGACUCC_GCUCUUAUACACCGCGUAUAAGAUGAUUCACCAUCUG_CAUGCGAACGCCU__AGUGGAAU
..(((((.......(((....)))...........))))).((.((....((((((((.....)))))))).)).))...................((......))... (-15.03 = -15.51 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:33 2006