Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,759,195 – 6,759,315 |
Length | 120 |
Max. P | 0.691487 |
Location | 6,759,195 – 6,759,315 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.78 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -13.20 |
Energy contribution | -15.60 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.10 |
Mean z-score | -1.77 |
Structure conservation index | 0.60 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6759195 120 + 20766785 UAUAUGUUUAAAAACAAAAAUAGGCGUUUACCCGGUAGCACUGAACCUUGGAAAACCAAUAUAGUUUAGUCUUAAAUUAUAUUGUUUUAAACAAUCGUCUUAUGAUUUGGACAAUCAUUU ....(((((((((............((((.((.(((........)))..)).))))((((((((((((....)))))))))))))))))))))...((((........))))........ ( -24.00) >DroSec_CAF1 10032 120 + 1 UAUUUGUUUAAAAACAAAAAUAGGUGUUUACCCGGUAGCACUGAACCUUGGAAAACCAAUAUAGUUUAGUCUUAAAUUAUAUUGUUUUAAACAAUCGUUUUAUGUUUUGGACAAUCAUUU ...((((((((((...(((((...((((((((.(((........)))..)).....((((((((((((....))))))))))))...))))))...)))))...))))))))))...... ( -24.60) >DroSim_CAF1 12735 120 + 1 UAUUUGUUUCAAAACAAAAAUAGGUGUUUACCCGGUAGCACUGAACCUUGGAAAACCAAUAUAGUUUAGUCUUAAAUUAUAUUGUUUUAAACAAUCGUUUUAUGUUUUGGACAAUUAUUU ...(((((.((((((((((((...((((((((.(((........)))..)).....((((((((((((....))))))))))))...))))))...))))).))))))))))))...... ( -26.60) >DroEre_CAF1 9650 99 + 1 UCUUUGUUUGAAAACAAAAAGAGCUGUUUU-UCAUUAGCACCGAACCUUGGAAAAGCAAUAUAGUUAAUUCCUAUAAUAUAUUGUUUUGAACAAUCUU--------------------UU ...((((((.(((((((.......((((((-((...((........))..)))))))).(((((.......))))).....)))))))))))))....--------------------.. ( -17.00) >DroYak_CAF1 12526 99 + 1 UCUUUGUUUAAAAACAAAAAGAGGAGUUUU-UUGUUAGCCCUGAACCUUGGGAAACCAAUAUAGUUAAAUUCUAUAAUUUAUUGUUUUCUACAAUCGU--------------------UU ...((((...(((((((....(((.(((..-.....)))))).....((((....))))(((((.......))))).....)))))))..))))....--------------------.. ( -17.80) >consensus UAUUUGUUUAAAAACAAAAAUAGGUGUUUACCCGGUAGCACUGAACCUUGGAAAACCAAUAUAGUUUAGUCUUAAAUUAUAUUGUUUUAAACAAUCGU_UUAUG_UUUGGACAAU_AUUU ...((((((((((.(((.....((((((........)))))).....)))......((((((((((((....)))))))))))))))))))))).......................... (-13.20 = -15.60 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:32 2006