Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,758,510 – 6,758,605 |
Length | 95 |
Max. P | 0.944886 |
Location | 6,758,510 – 6,758,605 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 87.37 |
Mean single sequence MFE | -18.85 |
Consensus MFE | -15.19 |
Energy contribution | -16.30 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.05 |
Mean z-score | -3.08 |
Structure conservation index | 0.81 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6758510 95 - 20766785 UAUACACGGAGAAAAAUAAAUCUUACAUUUCUAGCUGCUUACAAAUAUUCAACGUCAUUGAAAAAGAAUAUCGAUGAAUAAUUUGAAGUAGCUUC ........((((........))))........((((((((.((((((((((.((..(((.......)))..)).))))).))))))))))))).. ( -19.60) >DroSec_CAF1 9351 95 - 1 UAUACACACAAAAAAAUAAAUCAUACAUUUCAAGCUGCUUACAAAUAUUCAUAGUCAUUGAAGAAGAACAGAGAUGAAUAAUUCUAGGUAGCUUC ...............................((((((((((.((.(((((((..((..............)).))))))).)).)))))))))). ( -17.04) >DroSim_CAF1 12030 95 - 1 UAUACACAGAAAAAAAUAAAUCCCACAAUUCAAGCUGCUUACAAAUAUUCAUCGUCAUUGAAGAAGAAUAAAGAUGAAUAAUUUUAGGUAGCUUU ...............................((((((((((.((.((((((((...(((.......)))...)))))))).)).)))))))))). ( -19.90) >consensus UAUACACAGAAAAAAAUAAAUCAUACAUUUCAAGCUGCUUACAAAUAUUCAUCGUCAUUGAAGAAGAAUAAAGAUGAAUAAUUUUAGGUAGCUUC ...............................((((((((((.((.((((((((.((.........)).....)))))))).)).)))))))))). (-15.19 = -16.30 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:31 2006