Locus 1802

Sequence ID 2R_DroMel_CAF1
Location 6,754,121 – 6,754,223
Length 102
Max. P 0.500000
window2991

overview

Window 1

Location 6,754,121 – 6,754,223
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 89.71
Mean single sequence MFE -38.55
Consensus MFE -31.33
Energy contribution -31.07
Covariance contribution -0.25
Combinations/Pair 1.18
Mean z-score -1.37
Structure conservation index 0.81
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6754121 102 + 20766785
UUCAUGCGCUCCAGGAAACCGCCGGAUGGUGGAUACAAUCCCUGCAUGUUGACCUGAGGUGCUGGAUACAAUCCUGGAUUGGCUCCACCGAAUCCCUGCGGA
..................((((.((((((((((..((((((..((((.((.....)).)))).((((...)))).))))))..))))))..))))..)))). ( -37.20)
>DroSim_CAF1 7762 102 + 1
UUCAUGCGCUCCAGGAAACCACCAGAUGGUGGAUAUAGUCCCAGCAUGUUGACCUGAGGUGCUGGAUACAAUCCCGGAUUGGCUCCACCGAAUCCCUGCGGA
......((((((.(((..(((((....)))))........(((((((.((.....)).)))))))......))).)))((((.....))))......))).. ( -34.50)
>DroEre_CAF1 4912 102 + 1
UUCACGCGCUCCAGAAAGCCGCCGGAUGGUGGAUACAAUCCUUGCAUGUUGACCUGCGGUGCUGGAUACAGUGCCGGGUUGGCUCCGCCGAAUCCCUGCGGG
..................((((.((((((((((..((((((..(((.(....).)))((..(((....)))..))))))))..))))))..))))..)))). ( -43.70)
>DroYak_CAF1 7629 102 + 1
UUCAUGCGCUGCAGAAAGCCGCCGGAUGGUGGAUACAAUCCUUGCAUGUUGACCUGAGGUGCUGGAUAAGGUCCCGGGUUGGCUCCACCGAAUCCCUGCGGG
(((.(((...))))))..((((.((((((((((..((((((..((((.((.....)).)))).((((...)))).))))))..))))))..))))..)))). ( -38.80)
>consensus
UUCAUGCGCUCCAGAAAACCGCCGGAUGGUGGAUACAAUCCCUGCAUGUUGACCUGAGGUGCUGGAUACAAUCCCGGAUUGGCUCCACCGAAUCCCUGCGGA
..................((((.((((((((((..((((((..((((.((.....)).)))).((........))))))))..))))))..))))..)))). (-31.33 = -31.07 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:28 2006