Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,747,483 – 6,747,585 |
Length | 102 |
Max. P | 0.693839 |
Location | 6,747,483 – 6,747,585 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 85.16 |
Mean single sequence MFE | -30.88 |
Consensus MFE | -25.01 |
Energy contribution | -25.13 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.87 |
Structure conservation index | 0.81 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.693839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6747483 102 + 20766785 AACUUGGUAAAGGUAUUAUUUUGGACAGCUUU-CCGUACUUUCAAGGCAAUUCCCUGUG-GGGGCUUGUUGCAUUUGCCACUAUUACUGCUGUCAAUCAGCCAA .....(((((.(((........(((......)-))..........(((((..(((....-)))((.....))..)))))))).)))))((((.....))))... ( -24.90) >DroSec_CAF1 6921 103 + 1 GACUUGUAAAAGGUAUGAUUUUGGACAGCUUU-UCUUACUUUCGAGGCAAUUCCCCGUGCGGGGGUUGUUGCAUUUGCCACUAUGACUGCUGUCAAUCAGCCAA ...........(((.(((((...((((((...-((.......((((((((((((((....)))))..))))).)))).......))..)))))))))))))).. ( -30.84) >DroEre_CAF1 7205 101 + 1 GACUAGGUAAAGGU-UGAUUUCGGAUAGUUUAGCCGCACUUUGAAGGCAAUCCCCUGUG--GGGGUUGCUGCAUUUGCCACUAUUACUGCUGUCAAUCAGCCAA ...........(((-(((((.(((.((((.(((..(((...((..((((((((((...)--))))))))).))..)))..)))..)))))))..)))))))).. ( -36.90) >consensus GACUUGGUAAAGGUAUGAUUUUGGACAGCUUU_CCGUACUUUCAAGGCAAUUCCCUGUG_GGGGGUUGUUGCAUUUGCCACUAUUACUGCUGUCAAUCAGCCAA ...........(((.(((((...((((((................((((((((((.....))))))))))((....))..........)))))))))))))).. (-25.01 = -25.13 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:27 2006