Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,747,151 – 6,747,259 |
Length | 108 |
Max. P | 0.643122 |
Location | 6,747,151 – 6,747,259 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 86.73 |
Mean single sequence MFE | -34.20 |
Consensus MFE | -27.38 |
Energy contribution | -28.50 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.17 |
Mean z-score | -1.94 |
Structure conservation index | 0.80 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6747151 108 - 20766785 GUGAGAAGGUAGUGCUUGUACACGAUGGUGGUAGUUUAGACAACGGUUGAUAUCCUGUGGUUUAAACUUACCACCCUCUGGAAUAAAAUAACCUCAAAUGGCGCUGCA ........((((((((.......((.(((((((((((((((.((((........)))).)))))))).))))))).)).((..........))......)))))))). ( -35.90) >DroSec_CAF1 6597 108 - 1 GUGCGAAGGCAGUGCUUGUACACGAUGGUGGUAGUUUAAGCAUCGGUUGAUAUCCUGUGGCUUAAACUUACCACCCUCUGGAAUAAAAUACCCUCAAAUGGGGCUGCA ........(((((..((((.((.((.(((((((((((((((..(((........)))..)))))))).))))))).))))..))))....(((......)))))))). ( -38.80) >DroEre_CAF1 6935 105 - 1 GUGAGAAG-CACUGCCUGUACACGAUGGUGGUGGCUUA-GCAUCGGUUGAUAUCCUGUAGUUAAAACCCACCACCCCCUGGAAUAAA-GACCCUCAACUGGGGCUGCA .......(-((..(((....((.(..((((((((.(((-((((.((.......)).)).)))))...))))))))..))).......-...((......)))))))). ( -27.90) >consensus GUGAGAAGGCAGUGCUUGUACACGAUGGUGGUAGUUUA_GCAUCGGUUGAUAUCCUGUGGUUUAAACUUACCACCCUCUGGAAUAAAAUACCCUCAAAUGGGGCUGCA ........(((((.......((.((.(((((((((((((((..(((........)))..)))))))).))))))).))))..........(((......)))))))). (-27.38 = -28.50 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:26 2006