Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,436,837 – 1,436,957 |
Length | 120 |
Max. P | 0.749608 |
Location | 1,436,837 – 1,436,957 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -40.98 |
Consensus MFE | -39.16 |
Energy contribution | -39.60 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.14 |
Mean z-score | -1.51 |
Structure conservation index | 0.96 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1436837 120 + 20766785 GCUAUAACCUCGGAGAAGAUCAGCUCCGCCAGAAGUUUGGUCAUAUCCCCAUUUGCCCUCACGUCCAUGCUUUCUAUGGUCUUUCUGGGAGCGCGCGGUAGCACUUCUGGCGAGAUGAAC ........(((((((........))))(((((((((.(((........)))...((.((((.(.(((((.....))))).)....)))).))((......))))))))))))))...... ( -36.80) >DroSec_CAF1 54210 120 + 1 GCUAUAACCUCGGAGAAGAUCAGCUCCGCCAGAAGUUUGGUCAUAUCCCCGUUUGCUCUCACAUCCAUGCUUUCUAUGGUCUUUCUGGGGGCGCGCGGUAGCACUUCUGGCGAGAUGAAC ........(((((((........))))(((((((((..((......))((((.((((((((...(((((.....)))))......)))))))).))))....))))))))))))...... ( -44.50) >DroEre_CAF1 53380 120 + 1 GCUAUAACCUCGGAGAAAAUCAGCUCCGCCAGGAGUUUGGUCAUAUCCCCGUUUGCCCUCACGUCAAUGCUUUCUAUGGUCUUCCUGGGCGCGCGCGGUAGUACUUCUGGCGAGAUGAAC ........(((((((........))))(((((((((..((......))((((.(((.((((.(.....(((......)))...).)))).))).))))....))))))))))))...... ( -37.20) >DroYak_CAF1 58398 120 + 1 GCUAUUACCUCAGAGAAAAUCAGCUCCGCCAGAAGUUUGGUCAUAUCCCCGUUCGCCCUCACGUCCAUGCUUUCUAUGGUUUUUCUGGGGGCGCGCGGUAGCACUUCUGGCGAGAUGAAC ...................(((.(((.(((((((((..((......))((((.((((((((...(((((.....)))))......)))))))).))))....)))))))))))).))).. ( -45.40) >consensus GCUAUAACCUCGGAGAAAAUCAGCUCCGCCAGAAGUUUGGUCAUAUCCCCGUUUGCCCUCACGUCCAUGCUUUCUAUGGUCUUUCUGGGGGCGCGCGGUAGCACUUCUGGCGAGAUGAAC ........(((((((........))))(((((((((..((......))((((.((((((((.(.(((((.....)))))....).)))))))).))))....))))))))))))...... (-39.16 = -39.60 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:23 2006