Locus 18

Sequence ID 2R_DroMel_CAF1
Location 1,034,471 – 1,034,591
Length 120
Max. P 0.919028
window35

overview

Window 5

Location 1,034,471 – 1,034,591
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -26.33
Consensus MFE -25.85
Energy contribution -25.63
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.11
Structure conservation index 0.98
SVM decision value 1.12
SVM RNA-class probability 0.919028
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1034471 120 + 20766785
UCGCAUCAAUUAUAUAUACAUUAUGUAAUUUUGAGCCGUGUACUAUACGGUCGAUUAAAAGACUUAAAUAGCAAGCUAAAUAGAUAAAAAGUCUAUUAGGCCGAAGCCCACGUACUGACC
..((.(((((((((((.....))))))))..)))))((((..((...(((((................(((....)))(((((((.....))))))).))))).))..))))........ ( -25.80)
>DroSec_CAF1 37439 120 + 1
UCGCAUCAAUUAUAUAUACAUUAUGUAAUUUUGAGCCGUGUACUAUACGGUCGAUUAAAAGACUUAAAUAGCAAGCCAAAUAGAUAAAAAGUCUAUUAGGCCGAAGCCCACGUACUGACU
..((.(((((((((((.....))))))))..)))))((((..((((..((((........))))...))))...(((.(((((((.....))))))).))).......))))........ ( -26.70)
>DroEre_CAF1 93083 120 + 1
UCGCAUCAAUUAUAUAUACAUUAUGUAAUUUUGAGCCGUGUACUAUACGGUCGAUUAAAAGACUUAAAUAGCAAGCUAAAUAGAUAAAAAGUCUAUUAGGCUGAAGCCCACGUACUGACC
..((.(((((((((((.....))))))))..)))))((((..((((..((((........))))...))))..((((.(((((((.....))))))).))))......))))........ ( -26.50)
>consensus
UCGCAUCAAUUAUAUAUACAUUAUGUAAUUUUGAGCCGUGUACUAUACGGUCGAUUAAAAGACUUAAAUAGCAAGCUAAAUAGAUAAAAAGUCUAUUAGGCCGAAGCCCACGUACUGACC
..((.(((((((((((.....))))))))..)))))((((..((((..((((........))))...))))...(((.(((((((.....))))))).))).......))))........ (-25.85 = -25.63 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:35 2006