Locus 1799

Sequence ID 2R_DroMel_CAF1
Location 6,731,861 – 6,731,959
Length 98
Max. P 0.712977
window2988

overview

Window 8

Location 6,731,861 – 6,731,959
Length 98
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 82.20
Mean single sequence MFE -45.62
Consensus MFE -30.84
Energy contribution -32.23
Covariance contribution 1.39
Combinations/Pair 1.18
Mean z-score -1.99
Structure conservation index 0.68
SVM decision value 0.38
SVM RNA-class probability 0.712977
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6731861 98 - 20766785
UAGGCCAUUGGCCACCGUUUCAUCCUCGGACAUCGAGCUGGCUCGCUUGGGUGUGUUGCCAGCACUGUCGUUGUCCAGCGAAGCUAUAGCCGAGGCAA----
...(((.(((((....(((((...((.(((((.(((((((((.(((......)))..))))))....))).))))))).)))))....))))))))..---- ( -41.20)
>DroVir_CAF1 109496 102 - 1
GAGGCCGUUGGUGAGCGUCUCAUCCUCGGACAUGGAGCUGGCGCGCUUGGGCGUAUUGCCCGCGCUGUCGUUGUCCAGUGAGGCGAUGGCCGAGGCUGCGGC
(.((((.(((((.(.((((((((....(((((....((.(((((((..((((.....)))))))).)))))))))).)))))))).).))))))))).)... ( -46.90)
>DroPse_CAF1 106066 98 - 1
GAGCCCAUUGGCCACGGUCUCAUCUUCGGACAUGGAGCUCGCACGCUUCGGCGUGUUGCCAGCACUGUCGUUGUCCAGCGAGGCAAUGGCCGUGGCGA----
..(((...((((((..(((((.((....))..((((((..((((((....)))))).))((((......))))))))..)))))..)))))).)))..---- ( -46.60)
>DroMoj_CAF1 112678 96 - 1
CAGGCCAUU------CGUCUCGUCCUCGGACAUGGAGCUGGCGCGCUGCGGCGUGUUGCCGGCGCUGUCGUUGUCCAGCGAGGCGAUGGCCGAGGCCGCGGC
..((((((.------((((((((....((((((((.((((((((((....))))...))))))....))).))))).))))))))))))))...((....)) ( -49.30)
>DroAna_CAF1 74141 98 - 1
CAGGCCAUUGGUCACUGUCUCGUCCUCGGACAUGGAACUGGCACGCUUCGGUGUGUUCCCAGCACUGUCGUUGUCCAGCGAUGCAAUGGCCGAGGCUA----
..((((.(((((((.(((.((((....((((((((..(((((((((....)))))...)))).....))).))))).)))).))).))))))))))).---- ( -43.10)
>DroPer_CAF1 104507 98 - 1
GAGCCCAUUGGCCACGGUCUCAUCUUCGGACAUGGAGCUCGCACGCUUCGGCGUGUUGCCAGCACUGUCGUUGUCCAGCGAGGCAAUGGCCGUGGCGA----
..(((...((((((..(((((.((....))..((((((..((((((....)))))).))((((......))))))))..)))))..)))))).)))..---- ( -46.60)
>consensus
GAGGCCAUUGGCCACCGUCUCAUCCUCGGACAUGGAGCUGGCACGCUUCGGCGUGUUGCCAGCACUGUCGUUGUCCAGCGAGGCAAUGGCCGAGGCGA____
...(((.(((((....(((((...((.((((((((.((((((((((....))))...))))))....))).))))))).)))))....))))))))...... (-30.84 = -32.23 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:25 2006