Locus 1798

Sequence ID 2R_DroMel_CAF1
Location 6,729,711 – 6,729,821
Length 110
Max. P 0.581585
window2987

overview

Window 7

Location 6,729,711 – 6,729,821
Length 110
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 80.59
Mean single sequence MFE -34.82
Consensus MFE -22.30
Energy contribution -20.75
Covariance contribution -1.55
Combinations/Pair 1.37
Mean z-score -1.51
Structure conservation index 0.64
SVM decision value 0.10
SVM RNA-class probability 0.581585
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6729711 110 + 20766785
GCUCCGAGUGCGGAAUUCGUUGCAAGAAGCCGUCGAUGCUCAAGAAGCACAUUCGCACUCACACGGACGUGAGGCCAUUCACAUGCAGCCAUUGCAACUUCAGGUGAGUC---------
.....(((((((((..(((..((.....))...)))((((.....))))..)))))))))....((.(....).))((((((.(((((...))))).(....))))))).--------- ( -31.40)
>DroVir_CAF1 106961 110 + 1
GCUCCGAGUGCGGCAUUCGCUGCAAGAAACCCUCCAUGCUCAAGAAGCACAUACGCACACACACGGACGUGCGUCCGUUCACCUGCAGCCACUGCAAUUUCAGGUAAGCA---------
(((((((((((((((.....))).............((((.....))))....)))))....((((((....))))))))...(((((...)))))......))..))).--------- ( -31.60)
>DroGri_CAF1 89630 119 + 1
GCUCCGAGUGUGGAAUACGUUGCAAGAAGCCAUCCAUGCUCAAGAAGCAUAUACGCACCCACACCGAUGUGCGUCCAUUUACCUGCAGUCACUGCAGCUUCAGGUGAGCACAAACUGAA
((((((((((((((....(((......)))..)))))))))..(((((....((((((..........)))))).........(((((...))))))))))..).)))).......... ( -38.30)
>DroWil_CAF1 125569 110 + 1
GCUCGGAAUGUGGCAUACGCUGCAAGAAGCCAUCGAUGCUUAAAAAGCAUAUACGUACCCAUACAGAUGUGCGUCCAUUUACCUGCAGUUUAUGCAAUUUUAGGUGAGUA---------
(((..((((...(((((.((((((.(((((.......)))).....((((((..(((....)))..)))))).........).)))))).))))).))))..))).....--------- ( -31.20)
>DroMoj_CAF1 110016 110 + 1
GCUCCGAGUGCGGCAUUCGCUGCAAGAAGCCCUCCAUGCUGAAGAAGCACAUUCGCACGCACACGGACGUGCGUCCGUUCACCUGCAGCCACUGCAGCUUCAGGUGAGUC---------
.......(((((((....(((......)))......((((.....)))).....)).)))))((((((....))))))(((((((.(((.......))).)))))))...--------- ( -41.60)
>DroAna_CAF1 71943 110 + 1
GCUCCGAGUGCGGCAUUCGCUGCAAAAAGCCUUCCAUGUUGAAGAAACACAUUCGUACACAUACGGAUGUGAGGCCUUUUACAUGCAGCAACUGCAAUUUCAGGUGAGAA---------
.(((....((((((....))))))....((((..(((((.((((...((((((((((....))))))))))....)))).)))))..((....))......)))))))..--------- ( -34.80)
>consensus
GCUCCGAGUGCGGCAUUCGCUGCAAGAAGCCAUCCAUGCUCAAGAAGCACAUACGCACACACACGGACGUGCGUCCAUUCACCUGCAGCCACUGCAACUUCAGGUGAGUA_________
(((..((((((((.....((((((............((((.....))))...((((((..........)))))).........))))))..)))).))))..))).............. (-22.30 = -20.75 +  -1.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:24 2006