| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,727,245 – 6,727,348 |
| Length | 103 |
| Max. P | 0.826854 |
| Location | 6,727,245 – 6,727,348 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.51 |
| Mean single sequence MFE | -45.02 |
| Consensus MFE | -26.84 |
| Energy contribution | -27.48 |
| Covariance contribution | 0.65 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.826854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6727245 103 - 20766785 ---GGCACUGCCGUCGUCGGUUGCUCAAUUUUCGUCACUGGUGUUGCAGGAUCCUGGCGAUAUUGCAUUGUUUGCAUGGGCAACGGGGACGGCGGUGGAGGAAGUU ---..((((((((((.((.((((((((............((((((((((....)).))))))))(((.....))).)))))))).))))))))))))......... ( -45.70) >DroVir_CAF1 104307 105 - 1 GAUUGAGCUGCUGCUG-CUGCUGCUCCAGCUUGGGCACGGGCGUUGCCGGAUCCUGACGAUAUUGCAACGUUUGCAGUGGCAACGGCGACGGCGGCGGCGGCAAUU ......((((((((((-(((.((((...(((((....)))))((((((..(((.....)))((((((.....)))))))))))))))).))))))))))))).... ( -51.80) >DroSim_CAF1 83057 103 - 1 ---GGCACUGCCGUCGUCGGCUGCUCAAUUUUUGCCACUGGUGUUGCAGGAUCCUGGCGAUAUUGCAAUGUUUGCAUGGGCAACGGGGACGGCGGUGGCGGAAGUU ---(.((((((((((.(((..((((((............((((((((((....)).))))))))(((.....))).)))))).))).)))))))))).)....... ( -46.40) >DroEre_CAF1 77945 103 - 1 ---GGCACUGCCGUCGUCGGUUGCUCAAUUUUGGCCACUGGUGUUGCAGGAUCCUGGCGGUAUUGCAUCGUUUGCAUGGGCAACGGGGAGGGCGGUGGCGGAAGUU ---(.(((((((.((.((.((((((((......(((.(..(..((....))..)..).)))..((((.....)))))))))))).)))).))))))).)....... ( -44.10) >DroYak_CAF1 76377 103 - 1 ---GGCACUGCCGUAGUCGGUUGUUCAAUUUUUGCUACUGGUGUGGCAGGGUCCUGGCGAUAUUGCAUUGUUUGCAUGGGCAACGGGGAGGGCGGGGGAGGAAGUU ---....(((((.(..((.((((((((..(((((((((....)))))))))............((((.....)))))))))))).)).).)))))........... ( -33.90) >DroAna_CAF1 69462 103 - 1 ---UGCACCCCCAUCGCCUGUUGGUCCAUCUUGGCCACCGGGGUGGCCGGAUCCUGGCGAUACUGCAUUGUCUGCAUGGGCAGUGGCGAGGGUGGCGGUGGCAGAU ---.......((((((((..((((.(((((((((...)))))))))))))(((((.((..((((((..((....))...)))))))).)))))))))))))..... ( -48.20) >consensus ___GGCACUGCCGUCGUCGGUUGCUCAAUUUUGGCCACUGGUGUUGCAGGAUCCUGGCGAUAUUGCAUUGUUUGCAUGGGCAACGGGGACGGCGGUGGCGGAAGUU .....(((((((.((.((.((((((((......(((((((......))).....)))).....((((.....)))))))))))))).)).)))))))......... (-26.84 = -27.48 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:23 2006