| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,710,848 – 6,710,984 |
| Length | 136 |
| Max. P | 0.934387 |
| Location | 6,710,848 – 6,710,950 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.46 |
| Mean single sequence MFE | -29.44 |
| Consensus MFE | -21.34 |
| Energy contribution | -21.54 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.667654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6710848 102 + 20766785 AUUGUAAAUUCAAUUGAUAAAUU---CACAAGAGUGAAA--AUUUUUGUGCCUGUGUAG-CACUGUCGCCAGUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAA .((((((................---(((((((((....--)))))))))((.(...((-(((.(((((((((........))))))))).)).))).).)))))))) ( -32.50) >DroSec_CAF1 59378 102 + 1 AUCUUAAAUACAAUUGGUAAAUG---CAUAAGAGUACAA--AUUUUUCUGCCUGUGUGG-CACUGUCGCCAGUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAA ..........((((..(.....(---((.((((((....--)))))).)))......((-(((.(((((((((........))))))))).)).))).)..))))... ( -27.70) >DroSim_CAF1 66456 102 + 1 AUCGUAAAUAUAAGUGGUAAAUU---CACAAGAGUACAA--CUUUUUCUGCCUGUGUGG-CACUGUCGCCAGUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAA (((((........((((.....)---)))(((((.....--)))))..((((.....))-)).(((((((.....)))))))...))))).(((((.....))))).. ( -29.10) >DroEre_CAF1 61436 93 + 1 ---------------GAAAUAUUUGUAUCUGAAGUACACCAAUUUUUCUGCCUGUGUCGCCACUGUCGCCACUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAA ---------------((((.((((((((.....)))))..))).)))).......(((((((.(((((((.....))))))).))))))).(((((.....))))).. ( -33.00) >DroYak_CAF1 60145 102 + 1 AUCUUAAAUACAAUUGAAGUAUU---AGCUGUAGUACAA--CUUUUUUUGCCUGUGUGG-GACUGUCGCCACUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAA .(((((.((((((..(((((...---.((....))...)--))))..)))..))).)))-)).(((((((.....)))))))...(((((((.......))))))).. ( -24.90) >consensus AUCGUAAAUACAAUUGAUAAAUU___CACAAGAGUACAA__AUUUUUCUGCCUGUGUGG_CACUGUCGCCAGUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAA ................................................((((.(((....)))(((((((.....)))))))..))))...(((((.....))))).. (-21.34 = -21.54 + 0.20)
| Location | 6,710,848 – 6,710,950 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.46 |
| Mean single sequence MFE | -27.22 |
| Consensus MFE | -16.77 |
| Energy contribution | -17.45 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.934387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6710848 102 - 20766785 UUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAACUGGCGACAGUG-CUACACAGGCACAAAAAU--UUUCACUCUUGUG---AAUUUAUCAAUUGAAUUUACAAU .........((((....(.((((((((........))))))))).(((-((.....)))))......--))))....(((((---((((((.....))))))))))). ( -30.50) >DroSec_CAF1 59378 102 - 1 UUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAACUGGCGACAGUG-CCACACAGGCAGAAAAAU--UUGUACUCUUAUG---CAUUUACCAAUUGUAUUUAAGAU .((((...(((.(.(((((((((((((........))))))))...((-((.....)))).......--)))))))))..))---))..................... ( -26.50) >DroSim_CAF1 66456 102 - 1 UUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAACUGGCGACAGUG-CCACACAGGCAGAAAAAG--UUGUACUCUUGUG---AAUUUACCACUUAUAUUUACGAU .((((((........((..((((((((........))))))))..))(-((.....))).......)--)))))...(((((---(((.((.....)).)))))))). ( -28.90) >DroEre_CAF1 61436 93 - 1 UUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAAGUGGCGACAGUGGCGACACAGGCAGAAAAAUUGGUGUACUUCAGAUACAAAUAUUUC--------------- ............(((....((((((.((.((((.....)))).)).))))))....))).((((.(((.((((.......)))).))).))))--------------- ( -27.60) >DroYak_CAF1 60145 102 - 1 UUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAAGUGGCGACAGUC-CCACACAGGCAAAAAAAG--UUGUACUACAGCU---AAUACUUCAAUUGUAUUUAAGAU .(((((...((((........(((.(((((((....))))).)).((.-....)).)))......((--(((.....)))))---....))))..)))))........ ( -22.60) >consensus UUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAACUGGCGACAGUG_CCACACAGGCAGAAAAAU__UUGUACUCUUGUG___AAUUUAUCAAUUGUAUUUAAGAU ((((..........(((..((((((((........))))))))..))).........))))............................................... (-16.77 = -17.45 + 0.68)
| Location | 6,710,884 – 6,710,984 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 88.48 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -24.38 |
| Energy contribution | -24.38 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6710884 100 + 20766785 -AUUUUUGUGCCUGUGUAG-CACUGUCGCCAGUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAAUGUUUUCAGCGUCGCCCCAGCCCCUCUCC--AUGCC -......((((.......)-)))(((((((.....)))))))..((((((.(((((.....)))))...((.....)))))))).............--..... ( -28.50) >DroSec_CAF1 59414 100 + 1 -AUUUUUCUGCCUGUGUGG-CACUGUCGCCAGUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAAUGUUUCCAGCGUCGCCCCAGCCGCUCUCC--AUGCC -........((.((.((((-(((((....))))..((((((.((((.(((.(((((.....)))))...))).)))).))))))...)))))....)--).)). ( -35.00) >DroSim_CAF1 66492 100 + 1 -CUUUUUCUGCCUGUGUGG-CACUGUCGCCAGUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAAUGUUUCCAGCGUCGCCCCAGCCGCUCUCC--AUGCC -........((.((.((((-(((((....))))..((((((.((((.(((.(((((.....)))))...))).)))).))))))...)))))....)--).)). ( -35.00) >DroEre_CAF1 61461 104 + 1 AAUUUUUCUGCCUGUGUCGCCACUGUCGCCACUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAAUGUUUCCAGCGUCGCCCCAGCCGCUCUCCACAUGCC .........((.((((((((((.(((((((.....))))))).))))))..(.(((..((((..((.((((.....)))).)).))))..))))..)))).)). ( -41.70) >DroAna_CAF1 55635 91 + 1 ----UUUCUCUCAGUGUAA-CAAUGUCGCCACUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAAUGUUUCCAGCGUCGCC------GCUCCAC--CUUCC ----.........(((...-...(((((((.....)))))))..((((((.(((((.....)))))...((.....))))))))------....)))--..... ( -27.20) >consensus _AUUUUUCUGCCUGUGUAG_CACUGUCGCCAGUUUGGCGGCACUGGCGAUCGUAGCUUCUGGUUGCAAUGUUUCCAGCGUCGCCCCAGCCGCUCUCC__AUGCC .......................(((((((.....)))))))..((((((.(((((.....)))))...((.....)))))))).................... (-24.38 = -24.38 + 0.00)
| Location | 6,710,884 – 6,710,984 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 88.48 |
| Mean single sequence MFE | -36.52 |
| Consensus MFE | -24.20 |
| Energy contribution | -25.16 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6710884 100 - 20766785 GGCAU--GGAGAGGGGCUGGGGCGACGCUGAAAACAUUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAACUGGCGACAGUG-CUACACAGGCACAAAAAU- (((((--((.((..((((.((((((.(.(....)).))))..))...))))....)).))).))))(((.....)))....(((-((.....)))))......- ( -32.60) >DroSec_CAF1 59414 100 - 1 GGCAU--GGAGAGCGGCUGGGGCGACGCUGGAAACAUUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAACUGGCGACAGUG-CCACACAGGCAGAAAAAU- (((((--....(((..((((.((((...((....))))))..))))..)))..(.((((((((........))))))))).)))-))................- ( -38.10) >DroSim_CAF1 66492 100 - 1 GGCAU--GGAGAGCGGCUGGGGCGACGCUGGAAACAUUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAACUGGCGACAGUG-CCACACAGGCAGAAAAAG- (((((--....(((..((((.((((...((....))))))..))))..)))..(.((((((((........))))))))).)))-))................- ( -38.10) >DroEre_CAF1 61461 104 - 1 GGCAUGUGGAGAGCGGCUGGGGCGACGCUGGAAACAUUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAAGUGGCGACAGUGGCGACACAGGCAGAAAAAUU .((.((((...(((..((((.((((...((....))))))..))))..)))....((((((.((.((((.....)))).)).)))))))))).))......... ( -45.10) >DroAna_CAF1 55635 91 - 1 GGAAG--GUGGAGC------GGCGACGCUGGAAACAUUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAAGUGGCGACAUUG-UUACACUGAGAGAAA---- ....(--(((.(((------(((((((.((....))..((........))..)).)))))((((.((((.....)))).)))))-)).))))........---- ( -28.70) >consensus GGCAU__GGAGAGCGGCUGGGGCGACGCUGGAAACAUUGCAACCAGAAGCUACGAUCGCCAGUGCCGCCAAACUGGCGACAGUG_CCACACAGGCAGAAAAAU_ ..............(.(((.((((.((((((.......((........))........)))))).))))..((((....)))).......))).)......... (-24.20 = -25.16 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:18 2006