Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,710,257 – 6,710,348 |
Length | 91 |
Max. P | 0.600289 |
Location | 6,710,257 – 6,710,348 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 75.85 |
Mean single sequence MFE | -36.60 |
Consensus MFE | -25.73 |
Energy contribution | -26.85 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.16 |
Mean z-score | -1.48 |
Structure conservation index | 0.70 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6710257 91 - 20766785 CGCUUUUGGGAGUCGCCAACCAGGAGGAGGAGGUUGCCUCUCCAAGCGAUGGA---------------AGGGGCUGUGCCAGGGGAGUUCCAGAAGGGGU--GAGUAG (.(((((((((.((.((..((....))....(((.(((((((((.....))).---------------))))))...))).)).)).))))))))).)..--...... ( -38.80) >DroSec_CAF1 58724 86 - 1 CGCUUUUGGGAGUCGCCAACCAGGCGGAGGAGG---CUUCUCCAAGCGAUGGA---------------AGGGGCAGUGCCAGGGGUGUUCCAGGGGGU----GGGGAG ((((((..((((.((((..((.((((......(---((((((((.....))).---------------))))))..)))).))))))))))..)))))----)..... ( -32.40) >DroSim_CAF1 65525 88 - 1 CGCUUUUGGGAGUCGCCAACCAGGCGGAGGAGG---CUUCUCCAAGCGAUGGA---------------ACGGGCAGUGCCAGGGGUGUUCCAGGGGGUUU--GGGGGG .((((((.....(((((.....))))).)))))---).(((((((((..((((---------------((((((...))).....)))))))....))))--))))). ( -33.90) >DroYak_CAF1 59562 100 - 1 CGCUUUUGGGAGUCGCCAACU-GGAGGAGGAGG---CUCCUCCACACGAUGGGGGUGCUCAGGGGCGGAGGGACUGUGCCAGGGGAGUUCCAG----GGGAAGGGGGU ((((((((((..((.(((.((-(((((((....---))))))))...).))).))..))))))))))..((((((.(......).))))))..----........... ( -41.30) >consensus CGCUUUUGGGAGUCGCCAACCAGGAGGAGGAGG___CUUCUCCAAGCGAUGGA_______________AGGGGCAGUGCCAGGGGAGUUCCAGGGGGGGU__GGGGAG ..(((((((((.((.((..(((...(((((((....)))))))......)))..................((......)).)).)).)))))))))............ (-25.73 = -26.85 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:15 2006