Locus 1791

Sequence ID 2R_DroMel_CAF1
Location 6,705,257 – 6,705,358
Length 101
Max. P 0.705396
window2975

overview

Window 5

Location 6,705,257 – 6,705,358
Length 101
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 74.01
Mean single sequence MFE -29.63
Consensus MFE -15.11
Energy contribution -15.67
Covariance contribution 0.56
Combinations/Pair 1.18
Mean z-score -1.73
Structure conservation index 0.51
SVM decision value 0.36
SVM RNA-class probability 0.705396
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6705257 101 + 20766785
CGUUCAAAGUGCA--GCCACUCGAGGCGAUUUAGCUCGAGUGGCUUACAACAUGUAUCC-------UAUAAAGUUGACCACAACCGAUAAGCAGUCAGCAUUACCCACCC
........(((.(--((((((((((.(......)))))))))))))))...........-------......((((((..(.........)..))))))........... ( -29.30)
>DroPse_CAF1 79879 81 + 1
CGUUCAAAGUGCA--GCCACUCGCAGCGAUUAAGCCCGAGUGCUUUACAACUUCU---C-------GGUG--ACCGACCAGAGUC---AAGCGGACGG------------
(((((...(((.(--((.(((((..((......)).)))))))).))).....((---(-------(((.--....))).)))..---....))))).------------ ( -24.80)
>DroSec_CAF1 53809 99 + 1
CGUUCAAAGUGCAGAGCCACUCGAGGCGAUUUAGCUCGAGUGGCUUACAACUUGGAUUC-------UAUAAAGUUGACCACAACCGAUAAGCAGUCGGCAGUGC----CC
.((((((.((...((((((((((((.(......)))))))))))))...))))))))..-------............(((..(((((.....)))))..))).----.. ( -35.80)
>DroSim_CAF1 60531 99 + 1
CGUUCAAAGUGCAGAGCCACUCGAGGCGAUUUGGCUCGAGUGGCUUACAACUUGGAUUC-------UAUAAAGUUGACCACAACCGAUAAGCGGUCAGCAGUGC----CC
.((((((.((...((((((((((((.(.....).))))))))))))...))))))))..-------......(((((((.(.........).))))))).....----.. ( -39.20)
>DroYak_CAF1 54370 104 + 1
CGUUCAAAGUGCA--GCCACUCGAGGCGAUUUAGCUCGAGUGCCUUACAACAUGUAUUCUGUAUUCUGUAAAGUUGACCACAACCGAUAAGCAGUCGCCAUAGC----CC
.(.((((..((((--(.((((((((.(......)))))))))...(((.....))).........)))))...)))).).....((((.....)))).......----.. ( -23.00)
>DroPer_CAF1 78407 81 + 1
CGUUCAAAGUGCA--GCCACUCGCAGCGAUUAAGCCCGAGUGCUUUACAACGUCU---C-------GGUG--ACCGACCAGAGCC---AAGCGGACGG------------
(((((...(((.(--((.(((((..((......)).)))))))).)))...(.((---(-------(((.--....))).))).)---....))))).------------ ( -25.70)
>consensus
CGUUCAAAGUGCA__GCCACUCGAGGCGAUUUAGCUCGAGUGCCUUACAACUUGUAUUC_______UAUAAAGUUGACCACAACCGAUAAGCAGUCGGCA_UGC____CC
........((.......(((((((.((......))))))))).......)).....................((((((...............))))))........... (-15.11 = -15.67 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:13 2006