Locus 179

Sequence ID 2R_DroMel_CAF1
Location 1,436,557 – 1,436,677
Length 120
Max. P 0.577244
window405

overview

Window 5

Location 1,436,557 – 1,436,677
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -44.40
Consensus MFE -40.10
Energy contribution -39.48
Covariance contribution -0.62
Combinations/Pair 1.20
Mean z-score -1.36
Structure conservation index 0.90
SVM decision value 0.09
SVM RNA-class probability 0.577244
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1436557 120 - 20766785
AUUAGCAAAGGUGGCCGUUGGGAGGGACGCUGCUGGUUGAGCAUCGAUUGACUAUGGAUCGGGACUUGUAGUUGGACCGGGUCUGCCUUAUUCGCAUUGUAAGGCAGAACCUUUGGCGGC
.............(((((..((.((..((((((.((((..(.(((.((.....)).))))..)))).)))).))..))((.((((((((((.......)))))))))).))))..))))) ( -45.40)
>DroSec_CAF1 53930 120 - 1
AUUAGCAAAGGUGGCCGUUGGGAGGGCCGCUGCUGGCUGAGCAUCGAUUGACUAUGGAUCGGGACUUGUAGUUGGACCGGGUCUGCCUUAUUCGCAUUGUAAGGCAGCACCUUUGGCGGC
.(((((...(((((((........)))))))....)))))((.....(..((((..(........)..))))..)...(((((((((((((.......))))))))).))))...))... ( -45.70)
>DroEre_CAF1 53100 120 - 1
AUUAGCAAAGGCGGCCGUUGGGAGGGCCGCUGCUGGUUGAGCAUUGAUUGACUAUGGAUCGGGACCUGGGGUUGGGAGGGGUCUGCCUUAUUCGCAUUGUAAGGUAGCACCUUUGGCGGU
.(((((...(((((((........)))))))....)))))((.....(..(((..((.......))...)))..).(((((((((((((((.......))))))))).)))))).))... ( -43.60)
>DroYak_CAF1 58118 120 - 1
AUUAGCAAAGGUGGCCGUUGGGAGGGUCGCUGCUGGUUGAGCAUCGAUUGGCUAUGGUUUGGGACUUGCGGUUGGGCAGGGUCUGCCUUAUUAGCAUUGUAAGGUAGCACCUUUGGCGGC
.....(((((((((((((..((..(((((.((((.....)))).)))))..)))))))......(((((......)))))..(((((((((.......)))))))))))))))))..... ( -42.90)
>consensus
AUUAGCAAAGGUGGCCGUUGGGAGGGCCGCUGCUGGUUGAGCAUCGAUUGACUAUGGAUCGGGACUUGUAGUUGGACCGGGUCUGCCUUAUUCGCAUUGUAAGGCAGCACCUUUGGCGGC
.(((((...(((((((........)))))))....)))))((.....(..(((((((........)))))))..)...(((((((((((((.......))))))))).))))...))... (-40.10 = -39.48 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:22 2006