Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,697,110 – 6,697,203 |
Length | 93 |
Max. P | 0.969026 |
Location | 6,697,110 – 6,697,203 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 72.58 |
Mean single sequence MFE | -25.17 |
Consensus MFE | -11.11 |
Energy contribution | -11.55 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -2.16 |
Structure conservation index | 0.44 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6697110 93 - 20766785 GCUUGCAUUGUCAAUAUGUUUUUUUUUUUUCACCGUGCACCUAAGCAGCCAG----UUAACUGCAACCACUUGGCUGGCUGGUCGGUUGCAGCCACA ((..((((.......))))................((((.(..(.(((((((----((((.((....)).))))))))))).)..).)))))).... ( -26.00) >DroSec_CAF1 45755 84 - 1 GCUUGCAUUCCCAGUAUGUUUU-----UUUCAUCGUGCACCUAAGCAGCUAG----CCAACUGCAACCACUUGGCUG----CUUGGUUGCAGCCACA (((.(((......(((((....-----......)))))..((((((((((((----..............)))))))----))))).)))))).... ( -24.04) >DroSim_CAF1 50992 86 - 1 GCUUGCAUUCCCAGUAUGUU-------UUUCAUCGUGCACCUAAGCAGCUAGUCAGUCAACUGCAACCACUUGGCUG----CUUGGUUGCAGCCACA (((.(((......(((((..-------......)))))..((((((((((((((((....))).....)).))))))----))))).)))))).... ( -27.50) >DroEre_CAF1 47518 73 - 1 ------GCAUGCUAUGUGGU-U-----UCUCGCCGUGCACUUAAGCAGC--------CAAAAGCAGCCACUUGGCUG----GCUGGUUGCAGCCACA ------........((((((-(-----....((...))......(((((--------((....(((((....)))))----..)))))))))))))) ( -26.90) >DroYak_CAF1 46108 72 - 1 ------AUGUUCAAUGUGGU-U-----UUUCGCCGUGCACUAAAGCAGC--------CAACUGCAA-CACUUGGCUG----GUCGGUUGCAGCCACA ------........((((((-(-----....((...))......(((((--------(.(((((..-......)).)----)).))))))))))))) ( -21.40) >consensus GCUUGCAUUCCCAAUAUGUU_U_____UUUCACCGUGCACCUAAGCAGC_AG_____CAACUGCAACCACUUGGCUG____GUUGGUUGCAGCCACA ...................................(((......))).............((((((((................))))))))..... (-11.11 = -11.55 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:10 2006