Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,694,142 – 6,694,239 |
Length | 97 |
Max. P | 0.500000 |
Location | 6,694,142 – 6,694,239 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 77.72 |
Mean single sequence MFE | -17.42 |
Consensus MFE | -12.14 |
Energy contribution | -11.98 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -1.35 |
Structure conservation index | 0.70 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6694142 97 - 20766785 GAAAAAAGCAGUGGCUGA-------------AAAAAAAAAGAAUCCAAUGUGCGCCCGCAAAAGCAAAUAAAACUUUAUCAUUUGGGGAAGCCCUGCGCUUUCAUAGACU ((((...((((.((((..-------------............(((((..(((....)))((((.........)))).....)))))..))))))))..))))....... ( -19.69) >DroVir_CAF1 67446 85 - 1 -------------------------AGAAAAAAAAAAAAAAAACUCAACGUGCACCCGCAAAGGCAAAUAAAACUUUAUCAUUUGGGGAAGCCCUGCGCUUUCAUAGACU -------------------------........................(((((...((....))...................(((....))))))))........... ( -12.70) >DroSec_CAF1 42667 73 - 1 -------------------------------------AAAGAAUCCAAUGUGCGCCCGCAAAAGCAAAUAAAACUUUAUCAUUUGGGGAAGCCCUGCGCUUUCAUAGACU -------------------------------------..........(((.((((..((....))...................(((....))).))))...)))..... ( -14.20) >DroEre_CAF1 44348 104 - 1 ------AGCAGUGGCUGAAAAGCAAAGAAAUAAAAAAAAAAAAUCCAAUGUGCGCCCGCAAAAGCAAAUAAAACUUUAUCAUUUGGGGAAGCCCUGCGCUUUCAUAGACU ------...(((.(((....)))........................(((.((((..((....))...................(((....))).))))...)))..))) ( -18.80) >DroYak_CAF1 43116 94 - 1 ------AGCAGUGGCUGAAAA----------AAAACAAAAAAAGCCAAUGUGCGCCCGCAAAAGCAAAUAAAACUUUAUCAUUUGGGGAAGCCCUGCGCUUUCAUAGACU ------.(((.(((((.....----------...........))))).)))((((..((....))...................(((....))).))))........... ( -21.69) >consensus ______AGCAGUGGCUGA_____________AAAAAAAAAAAAUCCAAUGUGCGCCCGCAAAAGCAAAUAAAACUUUAUCAUUUGGGGAAGCCCUGCGCUUUCAUAGACU .................................................(((((...((....))...................(((....))))))))........... (-12.14 = -11.98 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:07 2006