Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,681,285 – 6,681,405 |
Length | 120 |
Max. P | 0.681496 |
Location | 6,681,285 – 6,681,405 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.51 |
Mean single sequence MFE | -24.76 |
Consensus MFE | -16.19 |
Energy contribution | -16.39 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -1.67 |
Structure conservation index | 0.65 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6681285 120 + 20766785 GCACUUCAACGAAAGUCCAAAGUUGGCCAAAAGGAAACAGUUCGUUUGGCUCCUUUGCAUUUCGCCUGCCCUGAGCAGUUAAUAAAGGCGUUUAAAAAUAGAUGCUAUAGAUAAUGCUCC (((..((..(((((...(((((..(((((((.(((.....))).))))))).)))))..))))).((((.....))))........((((((((....))))))))...))...)))... ( -31.30) >DroSec_CAF1 29757 97 + 1 ACACUUCAGCGAAAGUCAAAAGUUGGCCAAAGGGAAACAGUUCGUUU-----------------------CUGAGCAGUUAAUAAAGGCGUUUAAAAAUAGAUGCAAUAAAUAAUGCUCC .(((((..((....))...))).)).......((((((.....))))-----------------------))(((((..........(((((((....))))))).........))))). ( -21.41) >DroSim_CAF1 32836 97 + 1 ACACUUCAACGAAAGUCAAAAGUUGGCCAAAGGGAAACAGUUCGUUU-----------------------CUGAGCAGUUAAUAAAGGCAUUUAAAAAUAGAUGCAAUAAAUAAUGCUCC .(((((..((....))...))).)).......((((((.....))))-----------------------))(((((..........(((((((....))))))).........))))). ( -21.51) >DroEre_CAF1 27359 105 + 1 ACACUUCAGCGAAAGUCAAAAGUUGGCCAAGAGAAAACAGUUCGUUUUCGGCU--------------GCCUUGAGCAUUUGUUAAAAGCGUUUAAAAAUAGAUGCAACAAAUACUGCUC- ........((....))...(((..((((....((((((.....))))))))))--------------..)))(((((((((((....(((((((....)))))))))))))...)))))- ( -26.30) >DroYak_CAF1 29864 117 + 1 ACACUUCAACGAAAGUCAAAAGUUGGCCGCAGGAAAACAGUUCGUUUCGGUCUCUUGUAUGUUG---GCUCUGAGCAGUUGAUAAAAGCGUUUAAAAAUAGAUGCAACAAAUAAAUCUCC .....(((((.....(((..(((..((.((((((((((.....)))).....))))))..))..---))).)))...))))).....(((((((....)))))))............... ( -23.30) >consensus ACACUUCAACGAAAGUCAAAAGUUGGCCAAAGGGAAACAGUUCGUUU____C_______________GC_CUGAGCAGUUAAUAAAGGCGUUUAAAAAUAGAUGCAAUAAAUAAUGCUCC .......((((((.((((.....)))).....(....)..))))))..........................(((((..........(((((((....))))))).........))))). (-16.19 = -16.39 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:04 2006