Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,673,074 – 6,673,184 |
Length | 110 |
Max. P | 0.767137 |
Location | 6,673,074 – 6,673,184 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.82 |
Mean single sequence MFE | -26.34 |
Consensus MFE | -15.74 |
Energy contribution | -16.94 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.17 |
Mean z-score | -2.02 |
Structure conservation index | 0.60 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6673074 110 + 20766785 GCAAUAAAUUAAAGCGCUUACAAAUAGGUGCAAUAAUUAAUUAUCCCAAGAAGGGAUUAGUUGUGGCUUUAAAGGC-UCAAAGGGGGUAAAAGCGGUUUUAGUUUGUGGGA--------- ...(((((((((((((((((....))))))).(((((((...(((((.....)))))))))))).(((((....((-((.....)))).)))))...))))))))))....--------- ( -29.20) >DroSec_CAF1 21378 110 + 1 GCAAUAAAUUAAAGCGCUUACAAAUAGGUGCAGCAAUUAAUUAUUCCAGGAAGGGAUUAGUUGUGGAUUUAAGAACGUUAAAGGGGGUAAAAGC-AUUUUAGUUUGUGGGA--------- ...(((((((((((.((((.....(((((.((.(((((((((.(((...)))..))))))))))).)))))...((.((....)).))..))))-.)))))))))))....--------- ( -22.00) >DroSim_CAF1 23789 111 + 1 GCAAUAAAUUAAAGCGCUUACAAAUAGGUGCAGUAAUUAAUUAUCCCAGGAAGGGAUUAGUUGUGGAUUUAAGAACGUUAAAGGGGGUAAAAGCGAUUUUAGUUUGUGAGA--------- ...((((((((((((((((.....(((((.((.((((((...(((((.....))))))))))))).)))))...((.((....)).))..))))).)))))))))))....--------- ( -25.10) >DroEre_CAF1 19969 119 + 1 GCAAUAAAUUAAAGCGCUUACAAGUAGAUGCAAUAAUUAAUUAUCCCAGAAAGGGAUUCGUUUUUCAUUUCAGAAGUUCAAAGGGG-UAAGAGCGAAUUGAACUGCUGGCAAUUUCUAAG ...............(((....(((((...((((........(((((.....)))))((((((((.((..(...........)..)-)))))))))))))..)))))))).......... ( -23.70) >DroYak_CAF1 21621 120 + 1 GCAAUAAAUUAAAGCGCUUACAAGUAGAUGCAAUAAUUAAUUAUCCCAGAAAGGGAUUAAUUUUGCAUUUCAGGGAAUCGAAGGGGUUAAAAGCGAUUUUAGCUUGUGGCGAUUUCUAAG .......................(.((((((((.(((((...(((((.....))))))))))))))))))).((((((((.(.(((((((((....))))))))).)..))))))))... ( -31.70) >consensus GCAAUAAAUUAAAGCGCUUACAAAUAGGUGCAAUAAUUAAUUAUCCCAGGAAGGGAUUAGUUGUGGAUUUAAGAACGUCAAAGGGGGUAAAAGCGAUUUUAGUUUGUGGGA_________ ...(((((((((((((((((....))))))).(((((((...(((((.....)))))))))))).................................))))))))))............. (-15.74 = -16.94 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:02 2006