Locus 1781

Sequence ID 2R_DroMel_CAF1
Location 6,672,146 – 6,672,250
Length 104
Max. P 0.855618
window2963

overview

Window 3

Location 6,672,146 – 6,672,250
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.40
Mean single sequence MFE -33.77
Consensus MFE -19.45
Energy contribution -21.37
Covariance contribution 1.92
Combinations/Pair 1.25
Mean z-score -2.74
Structure conservation index 0.58
SVM decision value 0.81
SVM RNA-class probability 0.855618
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6672146 104 + 20766785
AAGUUUUGCCGCAUUUUU--GGUGGCAGCUGCAGAGCUUAACUAAAGUUGUGUAACUCAACUAAAGUAAAGUCUCUUUAGCCCGGCGAC--------------UUAUCGUGUUGCAGAAG
...((((((.((((....--(((.((.((((.(((((((.(((..(((((.......)))))..))).))).)))).))))...)).))--------------)....)))).)))))). ( -34.50)
>DroSec_CAF1 20427 104 + 1
AAGUUUUGCCGCAUUUUU--GGUGGCAGCUGAAGAGCUUAACUAAAGUUGUGUACCUCAACUAAAGUAAAGUCUCUUUAGCCCGGCGAC--------------UUAUCGUGUUGCUGAAG
......((((((......--.))))))((((((((((((.(((..(((((.......)))))..))).))).))))))))).(((((((--------------.......)))))))... ( -39.60)
>DroSim_CAF1 22833 104 + 1
AAGUUUUGCCGCAUUUUU--GGUGGCAGCUGCAGAGCUUAACUAAAGUUGUGUAACUCAACUAAAGUAAAGUCUCUUUAGCCCGGCGAC--------------UUAUCGUGUUGCAGAAG
...((((((.((((....--(((.((.((((.(((((((.(((..(((((.......)))))..))).))).)))).))))...)).))--------------)....)))).)))))). ( -34.50)
>DroEre_CAF1 19122 104 + 1
AAGUUUUGCCGCAUUUUU--GGCGGCAGAUGCAGAGCUUAACUAAAGUUGUGUAACUAAACUAAAGCAAAGUCACUUUAGCCCAGCGAC--------------UUAUCGUGUUGCAGAAG
.(((((((((((......--.))))))))((((.(((((.....))))).)))))))...((((((........))))))....(((((--------------.......)))))..... ( -30.00)
>DroYak_CAF1 20706 103 + 1
AAGU-UUGCCGCAUUUUU--GGUGGCAGAUGCAGAGCUUAACUAAAGUUGUGUAACUCAACUAAAGUAAAGUCUCUUUAGCCCUGCGAC--------------UUAUCGUGUUGCAGAAG
..((-(((((((......--.)))))))))(((((((((.(((..(((((.......)))))..))).))).))))...)).(((((((--------------.......)))))))... ( -34.40)
>DroAna_CAF1 22106 116 + 1
AAACUUUGCGGCUUCUGGGGGGCGACAGAUGUGGAGAUCAACUAAAGUUGUAGAACUCAUCUGG----AAGUCCCUUCCUCUCCCCAAACUACACACAAAUAUUCUUCGUUUUGCGGAAG
....((((.((.....(((((((..((((((.(.....((((....)))).....).)))))).----..))))))).....)).))))................((((.....)))).. ( -29.60)
>consensus
AAGUUUUGCCGCAUUUUU__GGUGGCAGAUGCAGAGCUUAACUAAAGUUGUGUAACUCAACUAAAGUAAAGUCUCUUUAGCCCGGCGAC______________UUAUCGUGUUGCAGAAG
......((((((.........))))))((((.(((((((.(((..(((((.......)))))..))).))).)))).)))).(((((((.....................)))))))... (-19.45 = -21.37 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:01 2006