Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,645,134 – 6,645,226 |
Length | 92 |
Max. P | 0.594771 |
Location | 6,645,134 – 6,645,226 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -20.71 |
Energy contribution | -20.22 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.21 |
Mean z-score | -1.50 |
Structure conservation index | 0.67 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6645134 92 - 20766785 ------------AAUGGGCCAACCACAUGUACACAAAACGCCCAGUU-----------GUCUCUGUGUGCUGGCCAGAAGUGUCUGCUAAAUCUUGUGGUUGCUUUGCCGAGUUG ------------....(((((((((((.(((((((.(((.....)))-----------.....)))))))((((.(((....))))))).....))))))))....)))...... ( -28.50) >DroSec_CAF1 194530 92 - 1 ------------AAUGGGCCAACCACAUGUACAUAAAACGCCCAGUU-----------GUCUCUGUGUGCUGGCCAGAAGUGUCUGCAAAAUCUUGUGGUUGCUUUGCCGAGUUG ------------....(((((((((((.(((((((.(((.....)))-----------.....)))))))..((.(((....))))).......))))))))....)))...... ( -24.80) >DroSim_CAF1 182306 92 - 1 ------------AAUGGGCCAACCACAUGUACACAAAACGCCCAGUU-----------GUCUCUGUGUGCUGGCCAGAAGUGUCUGCAAAAUCUUGUGGUUGCUUUGCCGAGUUG ------------....(((((((((((.(((((((.(((.....)))-----------.....)))))))..((.(((....))))).......))))))))....)))...... ( -26.70) >DroEre_CAF1 192566 89 - 1 ------------CAUCGGCCAACCACUUGUACACAA-ACGCCCAGUU-------------GUCUGUGUGCUGGCCAGAAGUGUCUGCAAAAUCUUGUGGUUGCUUUGCCGAGUUG ------------..((((((((((((..(((((((.-(((......)-------------)).)))))))..((.(((....)))))........)))))))....))))).... ( -30.50) >DroYak_CAF1 201162 115 - 1 UUCCCAUAGUGCAAUGGGCCAGCCACAUGUACACAAAACGGCCAGUUCAGUUGUGCGAGUGUGUGUGUGCUGGCCAGAAGUGUCUGCAAAAUCUUGUGGUUGCUUUGCCGAGUUG ........(.((....(((((((.(((..(((((...(((((.......)))))....)))))..)))))))))).((((((.(..(((....)))..).)))))))))...... ( -41.00) >DroAna_CAF1 210006 88 - 1 ------------CAUUGGCCG--CACGGAUACUCGAAAUAU-UAG-C-----------GUGUCUGUGUGUUGGCCAGAAGUGUCUGCAAAAUCUUGCGGUUGCUUUGCUCAGUUG ------------...((((((--(((((((((.(.......-..)-.-----------))))))))))...)))))((((((.((((((....)))))).))))))......... ( -32.70) >consensus ____________AAUGGGCCAACCACAUGUACACAAAACGCCCAGUU___________GUCUCUGUGUGCUGGCCAGAAGUGUCUGCAAAAUCUUGUGGUUGCUUUGCCGAGUUG ................(((((.......(((((((............................)))))))))))).((((((.((((((....)))))).))))))......... (-20.71 = -20.22 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:56 2006