Locus 1777

Sequence ID 2R_DroMel_CAF1
Location 6,643,997 – 6,644,095
Length 98
Max. P 0.576088
window2956

overview

Window 6

Location 6,643,997 – 6,644,095
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 81.78
Mean single sequence MFE -25.90
Consensus MFE -18.00
Energy contribution -18.16
Covariance contribution 0.16
Combinations/Pair 1.06
Mean z-score -1.61
Structure conservation index 0.69
SVM decision value 0.08
SVM RNA-class probability 0.576088
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6643997 98 - 20766785
CAUCAGCAGGAGCGGAGCAGGAGCAGGAGCUAAAGAAGCCAAAGUCUGAAUUCAGCAAUGGAUUCAAGAGAUAUGUCGGUCGGCAGAUGCCAGUUGGC
..(((((..((.(((..(...(((....)))...)...))....((((((((((....))))))).)))........).))(((....))).))))). ( -26.30)
>DroSec_CAF1 193436 92 - 1
CAGCAGCAGGAGCGGAGC------AGGAGCUAAAGAAGCCAAAGUCUGAAUUCAGCAUGGGAUUCAAGAGAUAUGUCGGUCGGCAGAUGCCAGUUGGC
...((((..((.((((((------....)))...(((.((...(((((....))).)).)).)))..........))).))(((....))).)))).. ( -22.70)
>DroSim_CAF1 181169 92 - 1
CGGCAGCAGGAGCGGAGC------GGGAGCUAAAGAAGCCAAAGUCUGAAUUCAGCAAUGGAUUCAAGAGAUAUGUCGGUCGGCAGAUGCCAGUUGGC
.(((.((....))..(((------....)))......)))....((((((((((....))))))).))).....(((((..(((....)))..))))) ( -29.80)
>DroEre_CAF1 191476 76 - 1
----------------GC------UGAAGCUGAAGAAGCCAAAGUCUGAAUUCAGCAAUGAAUUCAAGAGAUAUGUCGGGCGGCAGAUGCCAGUUGGC
----------------((------....)).......(((((.(((((((((((....)))))))....((....))))))(((....)))..))))) ( -23.10)
>DroYak_CAF1 199999 81 - 1
CAG-----------GAGC------UGGAGCUGAAGGAGCCAAAGACUGAAUUCAGCAAUGAAUUCAAGAGAUACGUCGGGCGGCAGAUGCCAGUAGGC
...-----------..((------(((..(((.....(((...(((((((((((....))))))))........))).)))..)))...))))).... ( -27.60)
>consensus
CAGCAGCAGGAGCGGAGC______AGGAGCUAAAGAAGCCAAAGUCUGAAUUCAGCAAUGGAUUCAAGAGAUAUGUCGGUCGGCAGAUGCCAGUUGGC
.....................................(((((....((((((((....))))))))...............(((....)))..))))) (-18.00 = -18.16 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:55 2006