Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,636,154 – 6,636,274 |
Length | 120 |
Max. P | 0.917692 |
Location | 6,636,154 – 6,636,274 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.75 |
Mean single sequence MFE | -48.08 |
Consensus MFE | -40.18 |
Energy contribution | -40.58 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.06 |
Mean z-score | -1.77 |
Structure conservation index | 0.84 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.917692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6636154 120 + 20766785 GAUCCACCACCCGUUUGCCAAUGCACAUGCGGGGUCCAAAGCCAAAGGGAAGGAACGUGAAGGGGCUGACCUGCAUCUUCUUUCCGGUCUCCGGAUCCCUUAACCAGCGCUCCGGCAGAA .............((((((...((....))(((((((..((((....((((((((.(((.(((......))).))).)))))))))).))..)))))))..............)))))). ( -41.80) >DroSec_CAF1 188250 120 + 1 GAUCCACCACUCGCUUGCCAAUGCACAUGCGGGGUCCAAAGCCGAAGGGAAGGAAGGUGAAGGGGCUGACCUGCAUCUUCUUUCCGGUCUCCGGAUCCCUUAGCCAGCGCUCCGGCAGAA ..((..((...((((.((....((....))(((((((..((((....((((((((((((.(((......))).)))))))))))))).))..)))))))...)).))))....))..)). ( -47.70) >DroSim_CAF1 175914 120 + 1 GGUCCACCACUCGCUUGCCAAUGCACAUGCGGGGUCCAAAGCCGAAGGGAAGGAAGGUGAAGGGGCUGACCUGCAUCUUCUUUCCGGUCUCCGGAUCCCUGAGCCAGCGCUCCGGCAGAA ((....))......(((((...((....))(((((((..((((....((((((((((((.(((......))).)))))))))))))).))..))))))).((((....)))).))))).. ( -50.60) >DroEre_CAF1 186439 120 + 1 GGUCCACCACUCGCUUGCCAAUGCACAUGCGUGGUCCAAAGCCGAAGGGCACGAAGGUGAAGGGGCUGACCUGCAUCUUCUUGCCGGUCUCCGGAUCCCUGAGCCAGCGUUCCGGCAGAA ((.((((((...((........))...)).)))).))...((((...((((.(((((((.(((......))).))))))).))))((.(((.((...)).))))).......)))).... ( -47.50) >DroAna_CAF1 203259 120 + 1 GGUCCACCAAUCUCUUGCCGAUGCACAUCCGAGGUCCGAAACCGAAAGGCAGGAAGGUGAAGGGGCUCACCUGCAUCUUCUUGCCAGUUUCGGGAUCGCGAAGCCAGCGUUCUGGCAGGA ((....))....((((((((((((.(.(((((..((((((((.....((((((((((((.(((......))).)))))))))))).)))))))).))).)).)...)))))..))))))) ( -52.80) >consensus GGUCCACCACUCGCUUGCCAAUGCACAUGCGGGGUCCAAAGCCGAAGGGAAGGAAGGUGAAGGGGCUGACCUGCAUCUUCUUUCCGGUCUCCGGAUCCCUGAGCCAGCGCUCCGGCAGAA ..............(((((...((....))(((((((..((((....((((((((((((.(((......))).)))))))))))))).))..)))))))..............))))).. (-40.18 = -40.58 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:54 2006