| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,634,819 – 6,634,928 |
| Length | 109 |
| Max. P | 0.603388 |
| Location | 6,634,819 – 6,634,928 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 85.85 |
| Mean single sequence MFE | -27.35 |
| Consensus MFE | -22.20 |
| Energy contribution | -22.39 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6634819 109 - 20766785 AAUGCGGCAUGCAAUCAUUUGCGUGCGCCUUCGCUUGGAAAUUCCUUUGCCAUAACUAAUCUCGAAGGCCAACCAAGACUAAGGCCAACCUAAGACUA--AGGACCAGUCC ......((((((((....))))))))(((((.((((((.....((((((..((.....))..))))))....))))).).)))))........((((.--......)))). ( -31.90) >DroSec_CAF1 186909 93 - 1 AAUGCGGCAUGCAAUCAUUUGCGUGCGCCUUCGCUUGGAAAUUCCUUUGCCAUAACUAAUCUCGAAGGCCAACCAAG----------------GACUA--AGGACCAGUCC ......((((((((....))))))))(((((((..(((.((.....)).)))..........))))))).......(----------------((((.--......))))) ( -27.10) >DroSim_CAF1 174562 93 - 1 AAUGCGGCAUGCAAUCAUUUGCGUGCGCCUUCGCUUGGAAAUUCCUUUGCCAUAACUAAUCUCGAAGGCCAACCAAG----------------GACUA--AGGACCAGUCC ......((((((((....))))))))(((((((..(((.((.....)).)))..........))))))).......(----------------((((.--......))))) ( -27.10) >DroEre_CAF1 185201 86 - 1 AAUGCGGCAUGCAAUCAUUUGCGUGCGCCUUCGCUUGGAAAUUCCUUUGCCAUAACUAAUCUCGAAGGCCAACCAA-------------------------GGACCAGUCC ......((((((((....))))))))(((((((..(((.((.....)).)))..........))))))).......-------------------------(((....))) ( -24.30) >DroYak_CAF1 195243 86 - 1 AAUGCGGCAUGCAAUCAUUUGCGUGCGCCUUCGCUUGGAAAUUCCUUUGCCAUAACUAAUCUCGAAGGCCAACCAA-------------------------GGACCAGUCC ......((((((((....))))))))(((((((..(((.((.....)).)))..........))))))).......-------------------------(((....))) ( -24.30) >DroAna_CAF1 201136 107 - 1 AAUGCGGCAUGCAAUCAUUUGCGUGCGCCUUCGCUUGGAAAUUCCUUUGCCAUAACUAAUCUGGAGAGCUAACCAAGGACCAGGACGAC----GACCAGGACGACCAGUCC ....((((((((((....))))))))((((((.(((((......((((.(((.........)))))))....)))))))..))).)..)----)....((((.....)))) ( -29.40) >consensus AAUGCGGCAUGCAAUCAUUUGCGUGCGCCUUCGCUUGGAAAUUCCUUUGCCAUAACUAAUCUCGAAGGCCAACCAAG________________GACUA__AGGACCAGUCC ......((((((((....))))))))((((((((..((.....))...)).............))))))................................(((....))) (-22.20 = -22.39 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:53 2006