Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,628,996 – 6,629,101 |
Length | 105 |
Max. P | 0.777053 |
Location | 6,628,996 – 6,629,101 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -16.38 |
Consensus MFE | -10.70 |
Energy contribution | -10.78 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -2.00 |
Structure conservation index | 0.65 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777053 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6628996 105 + 20766785 AAGUG--ACAAAAAAUUCAGUACUUCUUUUAUUGAGUUAGUAACUAAUAUCAAUGCUAAUUCAAUUCGCAGAUGCCCUUGUUUCCACCAAAAAUUUAAAUUACUACA .((((--(......................((((((((((((...........))))))))))))..((....))........................)))))... ( -13.30) >DroSec_CAF1 180945 106 + 1 AAAUGCCACAAAAAAUUCAGUACUUCCUUCAUUGAGUUAGUA-CCAAUAUCAAUGCUAAUUCAAUUCACAGAUGCUCUUGUUUGCACCAAAAAUUAAUAUAACUACA ...................(((........((((((((((((-..........)))))))))))).....(.(((........))).)...............))). ( -13.40) >DroSim_CAF1 168639 106 + 1 AAAUGCCACAAAAAAUUCAGUACUUCUUUCAUUGAGUUAGUA-CCAAUAUCAAUGCUAAUUCAAUUCGCAGAUGCUCUUAGUACCACCAAAAAUUAACAUUACUACA ...................(((((......((((((((((((-..........))))))))))))..((....))....)))))....................... ( -14.90) >DroEre_CAF1 179307 90 + 1 ----------------UCGGUACUUUUCUCAUUGAGUUAGUA-CCAAUAUCAAUGCUAAUUCAAUUCGCAGAUGCUGUUGUGUCCACCAAAAAUUCACAUUACUACA ----------------..(((.........((((((((((((-..........)))))))))))).....(((((....))))).)))................... ( -16.60) >DroYak_CAF1 188844 103 + 1 AAAUGGC---AAAAAUUCAGUACUCCCAUCAUUGGGUUAGUA-CCAAUAUCAAUGCUAAUUCAAUGAGCAGAUGCUGUUGUUUCCACCGAAAUUUAACAUUACUACA ...(((.---(((....(((((.((...((((((((((((((-..........))))))))))))))...)))))))...))))))..................... ( -23.70) >consensus AAAUG_CACAAAAAAUUCAGUACUUCUUUCAUUGAGUUAGUA_CCAAUAUCAAUGCUAAUUCAAUUCGCAGAUGCUCUUGUUUCCACCAAAAAUUAACAUUACUACA ..................((((........((((((((((((...........))))))))))))..((....)).........................))))... (-10.70 = -10.78 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:49 2006