Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,625,089 – 6,625,189 |
Length | 100 |
Max. P | 0.589579 |
Location | 6,625,089 – 6,625,189 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -14.83 |
Consensus MFE | -12.90 |
Energy contribution | -12.93 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -1.39 |
Structure conservation index | 0.87 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6625089 100 - 20766785 UGGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU (((...(((.......((((........))))........)))....((((((((..((((......)))).)))))))).............))).... ( -15.56) >DroSec_CAF1 177174 100 - 1 UAGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU ((((((..(((..................(((((......(((......)))(((.....)))))))))))..).))))).................... ( -14.36) >DroSim_CAF1 164864 100 - 1 UAGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU ((((((..(((..................(((((......(((......)))(((.....)))))))))))..).))))).................... ( -14.36) >DroEre_CAF1 175504 100 - 1 GAGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU ................................((.....((((......))))......((((((........)))))).............))...... ( -13.80) >DroYak_CAF1 184952 100 - 1 UGGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU (((...(((.......((((........))))........)))....((((((((..((((......)))).)))))))).............))).... ( -15.56) >DroAna_CAF1 191948 98 - 1 --AACCGACAAACAUAAAUUUCCAUUUCAAAUGCACAAAUGUCACAUUAGACGCUAUCAAAGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU --....((((.......((((.......)))).......))))....((((((((..((((......)))).)))))))).................... ( -15.34) >consensus UAGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU ................................((.....((((......))))......((((((........)))))).............))...... (-12.90 = -12.93 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:46 2006