Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,610,536 – 6,610,627 |
Length | 91 |
Max. P | 0.996925 |
Location | 6,610,536 – 6,610,627 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 72.80 |
Mean single sequence MFE | -24.12 |
Consensus MFE | -13.24 |
Energy contribution | -12.30 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.27 |
Mean z-score | -2.60 |
Structure conservation index | 0.55 |
SVM decision value | 2.77 |
SVM RNA-class probability | 0.996925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6610536 91 - 20766785 -GUGCGUCUGCUACAAUAGAUGCUGCUCAUAUAUGUACAUAUGUAUGUAAGUACGUACGUACUC------GUAUUCGUAUUCCUAUUCGUAUGUGGCG -..(((((((......))))))).((.((((((((...(((((.(((..(((((....))))).------.))).))))).......)))))))))). ( -27.90) >DroSec_CAF1 162833 73 - 1 -GAGCGUCUGCUACAAUAGAUGCUGCUCAUAUA--------UGUAUGUAAGUACGUACAUAUUC------CU----------CUAUUCGUAUGUGGCG -.((((((((......))))))))((.((((((--------((((((((......))))))...------..----------.....)))))))))). ( -20.90) >DroSim_CAF1 149679 74 - 1 UGUGCGUCUGCUACAAUAGAUGCUGCUCAUAUA--------UGUAUGUAAGUACGUACGUAUUC------CU----------CUAUUCGUAUGUGGCG ...(((((((......))))))).((.((((((--------((.(((..(((((....))))).------..----------.))).)))))))))). ( -20.40) >DroEre_CAF1 161812 86 - 1 -GUGUGUCUGCUACAUUAGAUG---CUCAUAUA--------CGUACGGAUUCGGAUUCGUAUUCGUAUUCGUAUUCGUACUGCUAUUCGUAUGUGGCG -((((((..((..........)---)..)))))--------)((((((((.(((((.((....)).))))).)))))))).(((((......))))). ( -27.30) >consensus _GUGCGUCUGCUACAAUAGAUGCUGCUCAUAUA________UGUAUGUAAGUACGUACGUAUUC______CU__________CUAUUCGUAUGUGGCG .........((((((...((......))..............(((((((......))))))).............................)))))). (-13.24 = -12.30 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:43 2006