Locus 1767

Sequence ID 2R_DroMel_CAF1
Location 6,609,032 – 6,609,136
Length 104
Max. P 0.862929
window2943

overview

Window 3

Location 6,609,032 – 6,609,136
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.30
Mean single sequence MFE -21.74
Consensus MFE -15.72
Energy contribution -16.08
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.67
Structure conservation index 0.72
SVM decision value 0.84
SVM RNA-class probability 0.862929
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6609032 104 - 20766785
UACAAUUAUGUAUGCUUCGGCUGCUGCCUGAUAAAUUUGUAUUUAUUAGACUCAUACAUCAAGUUGGCAUCU---UUGUGGGUCUCUCUCCGUCUAUAUCCCA-------------CUCG
..((((((((((((..(((((....)))((((((((....))))))))))..)))))))..)))))......---..(((((.................))))-------------)... ( -25.33)
>DroSim_CAF1 148188 104 - 1
UACAAUUAUGUAUGCUUCGGCUGCUGCCUGAUAAAUUUGUAUUUAUUAGACUCAUACAUCAAGUUGGCAUCU---UUGUGGGUCUCUCUCCGUCUAUAUCCCA-------------CUCG
..((((((((((((..(((((....)))((((((((....))))))))))..)))))))..)))))......---..(((((.................))))-------------)... ( -25.33)
>DroEre_CAF1 160433 95 - 1
UACAAUUAUGUAUGCUUCGGCUGCUGCCUGAUAAAUUUGUAUUUAUUAGACUCAUACAUCAAGUUGGCAUCU---UUGUGGGUC----UCUGUCUAUAUCCC------------------
..((((((((((((..(((((....)))((((((((....))))))))))..)))))))..)))))......---.((((((..----....))))))....------------------ ( -21.10)
>DroWil_CAF1 201269 84 - 1
UACAAUUAUAUAUGCUUCGGUUAGUGGCUGAUAAAUUUGUAUUUAUUAGACUCAUACAUCAAGUUGGCAUCUCCUUUGUGAAUG------------------------------------
(((((......(((((..(((..(((((((((((((....))))))))).).)))..))).....))))).....)))))....------------------------------------ ( -14.70)
>DroYak_CAF1 168182 113 - 1
UACAAUUAUGUAUGCUUCGGCUGCUGCCUGAUAAAUUUGUAUUUAUUAGACUCAUACAUCAAGUUGGCAUCU---UUGUGGCUC----UCCGUCUAUAUCCCAUACCCAUAUCCCCCUCG
..((((((((((((..(((((....)))((((((((....))))))))))..)))))))..)))))......---.(((((...----............)))))............... ( -20.56)
>DroAna_CAF1 175202 108 - 1
UACAAUUAUGUAUGCUUCGGCUGCUGCCUGAUAAAUUUGUAUUUAUUAGACUCAUACUUCAAGUUGCCAUCU---UUGUGGGUCUCCCCCGGUGGAUCUCUCUUAUCC-UAU--------
..(((((..(((((..(((((....)))((((((((....))))))))))..)))))....)))))(((((.---..(.(((....))))))))).............-...-------- ( -23.40)
>consensus
UACAAUUAUGUAUGCUUCGGCUGCUGCCUGAUAAAUUUGUAUUUAUUAGACUCAUACAUCAAGUUGGCAUCU___UUGUGGGUC____UCCGUCUAUAUCCCA_________________
..((((((((((((..(((((....)))((((((((....))))))))))..)))))))..)))))...................................................... (-15.72 = -16.08 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:42 2006