| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,604,292 – 6,604,388 |
| Length | 96 |
| Max. P | 0.796624 |
| Location | 6,604,292 – 6,604,388 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 87.33 |
| Mean single sequence MFE | -32.21 |
| Consensus MFE | -26.73 |
| Energy contribution | -26.23 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6604292 96 - 20766785 ------------UUUUUGGCUGAAUCGGCUGUCUGCACUCCUUGA--GACGGCC-AAUGACUGCGAUACCAA-CUGAAUGGCCAAUCAAUAACAUUGGCCAAGACAUGCAGC ------------......((((..((((((((((.((.....)))--)))))))-.................-.....((((((((.......)))))))).))....)))) ( -29.90) >DroSec_CAF1 156715 96 - 1 ------------UUUUUGGCUGAAUCGGCUGUCUGCGCUCCUUGA--GACGGCC-AACGACUGCGAUACCAA-CUGAAUGGCCGAUCAAUAACAUUGGCCAAGACAUGCAGC ------------......((((..((((((((((.((.....)))--)))))))-.................-.....((((((((.......)))))))).))....)))) ( -28.90) >DroSim_CAF1 143521 96 - 1 ------------UUUUUGGCUGAAUCGGCUGUCUGCGCUCCUUGA--GACGGCC-AACGACUGCGAUACCAA-CUGAAUGGCCAAUCAAUAACAUUGGCCAAGACAUGCAGC ------------......((((..((((((((((.((.....)))--)))))))-.................-.....((((((((.......)))))))).))....)))) ( -29.20) >DroEre_CAF1 155882 107 - 1 UUU---UUUUUUUUUUUGGCUGAAUCGGCUGUCUGCACUCCUUGAGAGACGGCC-AACGACUUCGAUACCAA-CUGAAUGGCCAAUCAAUAACAUUGGCCAAGACAUGCAGC ...---............((((..((((((((((.((.....))..))))))))-..((....)).......-..)).((((((((.......)))))))).......)))) ( -29.90) >DroYak_CAF1 163347 108 - 1 UCGUUUUUUCGUUUUUUGGCUGAAUCGGCUGUCUACACUCCUUGA--GACGGCC-AACGACUUCGCUGCCAA-CUGAAUGGCCAAUCAAUAACAUUGGCCAAGACAUGCAGC (((((..((((((....))).)))..((((((((.((.....)))--)))))))-)))))....(((((...-.....((((((((.......))))))))......))))) ( -34.94) >DroAna_CAF1 170340 107 - 1 UCGUUG---UGUUCGUUUGCUGAAUCGGCUGUCUGCACUCCUUGA--GACAGCCGAAAGACUGGGAUACCAAGCUGAAUGGCCAAUCAAUAACAUUGGCCAAGACAUGCAGC ..((((---(((((....(((...((((((((((.((.....)))--))))))))).....(((....))))))....((((((((.......)))))))).)).))))))) ( -40.40) >consensus ____________UUUUUGGCUGAAUCGGCUGUCUGCACUCCUUGA__GACGGCC_AACGACUGCGAUACCAA_CUGAAUGGCCAAUCAAUAACAUUGGCCAAGACAUGCAGC ..................((((..(((((((((..((.....))...)))))))........................((((((((.......)))))))).))....)))) (-26.73 = -26.23 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:41 2006