| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,599,776 – 6,599,867 |
| Length | 91 |
| Max. P | 0.897630 |
| Location | 6,599,776 – 6,599,867 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 84.92 |
| Mean single sequence MFE | -23.89 |
| Consensus MFE | -17.22 |
| Energy contribution | -16.89 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.897630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6599776 91 - 20766785 AAGUCAUAAGCUGAAGCUGCAAAGUUUUACGUGGCGCC-----------UUUAGCAAGAUACAUUAAUUUUUUUUUUUGCAAAAUACUAAUUAUGGCUUAAA ((((((((((((((((.(((...(.....)...))).)-----------))))))(((((......)))))...................)))))))))... ( -20.40) >DroSec_CAF1 152250 101 - 1 AAGCCAUAAGCUGAAGCUGCAAAGUUUUACGCGGCGCCCAAACAGCGACUUUAGCAAGUUAUAUUAAUUUAU-UUUUAGCAAAAUACUAAUUAUGGCUUUAA ((((((((((((((((((((..........)))))((.......))...))))))..((((...........-...))))..........)))))))))... ( -25.34) >DroSim_CAF1 139047 101 - 1 AAGCCAUAAGCUGGAGCUGCAAAGUUUUACGUGGCGCCCAAACAGGGAAUUUAGCAAGUUAUAUUAAUAUAU-UUUUAGCAAAAUACUUAUUAUGGCUUUAA (((((((((((((((((..(..........)..)).(((.....)))..))))))..((((...........-...))))..........)))))))))... ( -25.94) >consensus AAGCCAUAAGCUGAAGCUGCAAAGUUUUACGUGGCGCCCAAACAG_GA_UUUAGCAAGUUAUAUUAAUUUAU_UUUUAGCAAAAUACUAAUUAUGGCUUUAA ((((((((((((((((((((..........)))))((................))...................))))))..........)))))))))... (-17.22 = -16.89 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:36 2006